| structure name | STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI (Homing endonuclease I-DmoI) |
| reference | Marcaida et al. 'J. 31 1063 2017 |
| source | Desulfurococcus mucosus |
| experiment | X-ray (resolution=2.25, R-factor=0.198) |
| structural superfamily | Homing endonucleases; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YLYRSERVTQVDTRERSRRWHDDRHVL |
Estimated binding specificities ?
| readout + contact |  |
A | 8 0 0 0 0 0 0 8 61 88 0 8 0 0 0 0 0 0 C | 0 0 96 96 0 0 0 8 10 0 0 0 0 96 96 0 0 96 G | 10 96 0 0 96 96 96 8 17 8 96 1 0 0 0 96 96 0 T | 78 0 0 0 0 0 0 72 8 0 0 87 96 0 0 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatYAKGLG--RT----------QG--EC----------------------------------RT----KT L +-----------------------------6x1j_A +-2 YGRGRG--------------QG--EC------------------------------------YCNGKG L ! ! +--------------------1r7m_B +-3 +--------1 CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L ! ! +--------------------4yit_A +-4 ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L ! ! +-----------------------------2fld_B +-5 ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L ! ! +-----------------------------3mxb_B +-6 ! SAIAQG--------QA----QA--TC------------------------------------------ L ! ! +-----------------------------1t9i_B +-7 ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L ! ! +-----------------------------1zzi_A +-8 ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L ! ! +-----------------------------5t2n_A --9 ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L ! +-----------------------------7rcf_A ! SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L +-----------------------------6fb0_A |
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updated Fri Sep 13 20:11:01 2024