| structure name | STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI (Homing endonuclease I-DmoI) |
| reference | Marcaida et al. 'J. 31 1063 2017 |
| source | Desulfurococcus mucosus |
| experiment | X-ray (resolution=2.25, R-factor=0.198) |
| structural superfamily | Homing endonucleases; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YLYRSERVTQVDTRERSRRWHDDRHVL |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 10 0 0 96 96 0 0 10 64 0 0 0 0 0 0 96 C | 0 96 86 0 0 0 0 96 10 21 10 96 96 96 0 0 96 0 G | 96 0 0 96 96 0 0 0 1 12 10 0 0 0 96 96 0 0 T | 0 0 0 0 0 0 0 0 85 53 12 0 0 0 0 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatYAKGLG--RT----------QG--EC----------------------------------RT----KT L +6x1j_A +-------------------------1 YGRGRG--------------QG--EC------------------------------------YCNGKG L +---2 +1r7m_B ! ! CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L +-3 +-------------------------4yit_A ! ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L +-4 +-----------------------------2fld_B ! ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L +-5 +-----------------------------3mxb_B ! ! SAIAQG--------QA----QA--TC------------------------------------------ L +-6 +-----------------------------1t9i_B ! ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L +-7 +-----------------------------1zzi_A ! ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L +-8 +-----------------------------5t2n_A ! ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L --9 +-----------------------------7rcf_A ! SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L +-----------------------------6fb0_A |
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updated Sun Aug 3 09:42:17 2025