| structure name | STRUCTURES AND DYNAMICS OF MESOPHILIC VARIANTS FROM THE HOMING ENDONUCLEASE I-DMOI (Homing endonuclease I-DmoI) |
| reference | Marcaida et al. 'J. 31 1063 2017 |
| source | Desulfurococcus mucosus |
| experiment | X-ray (resolution=2.25, R-factor=0.198) |
| structural superfamily | Homing endonucleases; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YLYRSERVTQVDTRERSRRWHDDRHVL |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 0 0 96 96 0 0 12 60 0 0 0 0 0 0 96 C | 0 96 96 0 0 0 0 96 12 12 12 96 96 96 0 0 96 0 G | 96 0 0 96 96 0 0 0 0 24 12 0 0 0 96 96 0 0 T | 0 0 0 0 0 0 0 0 84 48 12 0 0 0 0 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatYAKGLG--RT----------QG--EC----------------------------------RT----KT L +6x1j_A +-----------------------------1 YGRGRG--------------QG--EC------------------------------------YCNGKG L ! +1r7m_B ! CGRG--ST--TTKARGQTFA--QG--NG----------------HC--SC----LAQGRGQA------ L ! +------------------------4yit_A ! ! SAYCLC--------------------------------NA--RG----RG--DTIC--RG-------- L +-7 +-4 +2fld_B ! ! ! ! +--------------2 SGIG----------RGQG--DG--TA----------------YC--AT--SC--VCKGRG-------- L ! ! ! +---------3 +6fb0_A ! ! +-5 ! SAIAQG--------QA----QA--TC------------------------------------------ L ! ! ! ! +--------------1t9i_B +-8 +--6 ! STIGRG--------LTEC--ST--KG------------------TT--NA------MGRTSC------ L ! ! ! +-------------------------5t2n_A ! ! ! ST--SC----RG--HTRT--TT--MT------------------LT--NC----YA----YA------ L --9 ! +--------------------------7rcf_A ! ! STIT----------QTST--AT--TC--------------------YT--------DTRGST------ L ! +-----------------------------3mxb_B ! ----------------------------ACSTICICRCKCIC--EC----------RC---------- L +-----------------------------1zzi_A |
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updated Mon Jun 29 20:36:21 2026