5wcu_N : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF 167 BP NUCLEOSOME BOUND TO THE GLOBULAR DOMAIN OF LINKER HISTONE H5
reference	Jiang et al. 'J. 430 3093 2018
experiment	X-ray (resolution=5.53, R-factor=0.195)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5wcu_ABCDEFGHU 5wcu_KLMNOPQRV
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5wcu_N interface=3, rkRkesyaiyiykvlkqvhpdtgisskamsimnsfvndiferiaaeasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytss

  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !                  +------4 
  ----RG----       !                  !      +----5x0y_G    
                   !            +-----5 
  ----RT----       !            !     !             +8u14_G    
                   !            !     !           +-1 
  ----RA----     -10          +-6     +-----------3 +1zla_C    
                   !          ! !                 ! 
  ----RG----       !          ! !                 +8ox0_C    
                   !        +-7 ! 
  ----RT----       !        ! ! +-----------------8grq_A    
                   !        ! ! 
  ----RA--RA       !  +-----8 !                  +6a5l_g    
                   !  !     ! +------------------2 
  ----RG----       !  !     !                    +8txv_G    
                   +--9     ! 
  --LCRT----          !     +--------------------8hr1_E    
                      ! 
  ----RG----          +--------------------------8jla_C

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updated Sun Aug 3 10:22:31 2025