interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PRFA-DNA BINARY COMPLEX
(Listeriolysin positive regulatory factor A)
referenceZhu et al. 'Protein 8 308 2017
sourceListeria monocytogenes
experimentX-ray (resolution=2.99, R-factor=0.252)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
multimeric complexes5lej_AB 5lek_AB 5lrs_AB 5x6d_GH 5x6d_MN 5x6e_EF 5x6e_MN 6qwf_AB 6qwh_AB 6qwk_AB 6qwm_AB
reference complex5lej_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureMHSASR

Estimated binding specificities ?

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# IC=5.300 IC/col=0.883 n_of_columns=6 specificity:   
A |   9   9  96  96   9  96
C |  11  11   0   0  67   0
G |   9   9   0   0   9   0
T |  67  67   0   0  11   0
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updated Thu Sep 12 22:16:16 2024