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structure nameCRYSTAL STRUCTURE OF DNMT3A-DNMT3L IN COMPLEX WITH DNA CONTAINING TWO CPG SITES
(DNA CYTOSINE-5-METHYLTRANSFERASE 3A)
referenceZhang et al. Nature 554 387 2018
sourceHOMO SAPIENS
experimentX-ray (resolution=2.65, R-factor=0.192)
structural superfamilyS-adenosyl-L-methionine-dependent methyltransferases;
sequence familyC5 cytosinespecific DNA methylase 579;
multimeric complexes5yx2_AD 6brr_AD 6pa7_ABCDEFGHKP 6w89_AD 6w89_GJ 6w8b_AD 6w8b_HK 6w8d_AD 6w8j_AD 8u5h_IJKMOQRS
reference complex6pa7_K
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureIVNPTRSNL

Estimated binding specificities ?

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# IC=4.655 IC/col=0.776 n_of_columns=6 specificity:   
A |   4  45  82   0   0  56
C |   4  13   4  96  96   6
G |  82  17   4   0   0  17
T |   6  21   6   0   0  17
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updated Fri Jan 9 05:07:22 2026