6jm9_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF DOT1L BOUND TO UNMODIFIED NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5wcu_ABCDEFGHU 5wcu_KLMNOPQRV 6jm9_ABCDEFGH 6jma_ABCDEFGH
redundant complexes	5wcu 6jma
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jm9_A interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  
  RG--RT----       +-----------------------------8grq_A    
                   !  
  RG--------       !                            +8jh2_e    
                   !         +------------------4 
  RGLCRT----       !    +----6                  +8hr1_E    
                 -10    !    ! 
  ------RA--       !    !    +-------------------6g0l_D    
                   !    ! 
  ----RA----       !    !                         +1zla_C    
                   !    !         +---------------3 
  ----RG----       +----9     +---5               +8ox0_C    
                        !     !   ! 
  ----RG----            ! +---7   +---------------8jla_C    
                        ! !   ! 
  ----RT----            ! !   !                   +8u14_G    
                        +-8   +-------------------1 
  ----RG----              !                       +5x0y_G    
                          ! 
  ----RA--RA              !                       +6a5l_g    
                          +-----------------------2 
  ----RG----                                      +8txv_G

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updated Sun Aug 3 11:51:24 2025