6jm9_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF DOT1L BOUND TO UNMODIFIED NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5wcu_ABCDEFGHU 5wcu_KLMNOPQRV 6jm9_ABCDEFGH 6jma_ABCDEFGH
redundant complexes	5wcu 6jma
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jm9_A interface=3,28,46, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  
  --RA----LT----       +-----------------------------4z5t_A    
                       !  
  --RGYA--LC----       !                             +5mlu_A    
                       !                             ! 
  HTRA----LT--RC       !                     +-------3   +5xm1_A    
                       !                     !       ! +-1 
  HTRG--------RT       !                     !       +-2 +8g57_E    
                       !                   +-6         ! 
  --RT--RG------     -10                   ! !         +6pww_K    
                       !                   ! ! 
  --RT--------RA       !                +--7 +-------7ea8_A    
                       !                !  ! 
  ------------RA       !                !  !      +--7xsx_a    
                       !   +------------8  +------5 
  ------------RC       !   !            !         +--6qld_f    
                       !   !            ! 
  --RG--RC------       +---9            !           +6fq8_A    
                           !            +-----------4 
  --RG----------           !                        +6y5d_Q    
                           ! 
  ----------KT--   L       +-------------------------7cvo_A

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updated Fri Sep 13 22:11:23 2024