6jnm_A : 3D-footprint complex

structure name	REF6 ZNF2-4-NAC004-MC3 COMPLEX (Lysine-specific demethylase REF6)
reference	Yao et al. 'Nat 10 2063 2019
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.05, R-factor=0.201)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
multimeric complexes	6jnn_AN
redundant complexes	6jnl_A 6jnn_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6jnm_A interface=14,17,18,45,47,48,51,75,76,77,78,80,81, rnicpikgcgknfFshKYlvqhqrvhsddrplkcpwkgckmtfkWaWSrtEhirvhtgarpyvcaepdcgqtfrFVSDfSRhkrktghs
interface signature	FKYWWSEFVSDSR

Estimated binding specificities ?

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# IC=5.998 IC/col=0.857 n_of_columns=7

specificity:

A |   0   7  24   0   0   1  20
C |  96   4  24   0   0   1  19
G |   0   4  24   0  96   1  19
T |   0  81  24  96   0  93  38

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Dendrogram of similar interfaces ?

matrix format

  
  --QA--TTNA--STQAQTATSTNTAT--TTLAHGTCRG--   L                                  +1g2f_F    
                                                                     +----------1 
  --------KG--------HTHG--RGTGTT--ACNAKGRG   L     +-----------------3          +1tf3_A    
                                                   !                 ! 
  RGST--YGYC----QC--TGSTRGYT--------------       +-5                 +-----------4is1_C    
                                                 ! ! 
  --------------RG--DGEC--RG--RGSGDCHA----   L   ! !                          +--2wbs_A    
                                               --6 +--------------------------2 
  --------------QA----TC--RG--RG--YCRT----   L   !                            +--7txc_E    
                                                 ! 
  --NT--STNAVT--QTSTSGKG--RG--------------   L   !                +------------6u9q_A    
                                                 +----------------4 
  QT--AG--KGRG--RG--DCKG------------------   L                    +------------7n5w_A

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updated Sun Aug 3 11:54:06 2025