structure name | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) (TATA BOX ZINC FINGER PROTEIN) |
reference | Elrod-Erickson et al. |
source | Mus musculus |
experiment | X-ray (resolution=2.00, R-factor=?) |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
redundant complexes | 1g2d_F |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QTNSQQASNATLHTR |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 0 96 14 96 83 96 96 13 C | 96 0 96 13 0 0 0 0 0 0 13 G | 0 96 0 1 0 0 0 13 0 0 57 T | 0 0 0 82 0 82 0 0 0 0 13scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: FINGER | ||
ATTTA | PubMed | 1g2f_F(6.15e-03) |
AATAAA | PubMed | 1g2f_F(1.23e-04) |
CTTAT | PubMed | 1g2f_F(6.15e-03) |
TAAAAA | PubMed | 1g2f_F(1.23e-04) |
AAAAA | PubMed | 1g2f_F(6.15e-03) |
term: TATA | ||
TATAAA | PubMed | 1g2f_F(7.00e-08) |
TATAAAAG | PubMed | 1g2f_F(2.81e-08) |
TATAAAA | PubMed | 1g2f_F(8.05e-10) |
TGTAAA | PubMed | 1g2f_F(1.00e-03) |
TATAA | PubMed | 1g2f_F(1.29e-05) |
TTTATA | PubMed | 1g2f_F(7.00e-08) |
CATAAA | PubMed | 1g2f_F(1.23e-04) |
TATATAA | PubMed | 1g2f_F(4.44e-05) |
CATAAAA | PubMed | 1g2f_F(2.64e-06) |
TATAAG | PubMed | 1g2f_F(1.40e-04) |
TCACTATATATAG | PubMed | 1g2f_F(1.57e-03) |
CATAAAAC | PubMed | 1g2f_F(2.84e-05) |
TATATA | PubMed | 1g2f_F(1.44e-03) |
CTTTT | PubMed | 1g2f_F(6.15e-03) |
CTATAAAAG | PubMed | 1g2f_F(1.54e-10) |
ATATAA | PubMed | 1g2f_F(1.40e-04) |
TATAAAT | PubMed | 1g2f_F(3.04e-06) |
TATCAA | PubMed | 1g2f_F(1.00e-03) |
TCTTAT | PubMed | 1g2f_F(9.00e-04) |
TAAAAGC | PubMed | 1g2f_F(1.17e-03) |
TCATAGA | PubMed | 1g2f_F(6.02e-03) |
TACAAAAG | PubMed | 1g2f_F(2.16e-04) |
TATAAGT | PubMed | 1g2f_F(1.29e-03) |
CATATAA | PubMed | 1g2f_F(1.29e-03) |
TTATATA | PubMed | 1g2f_F(4.44e-05) |
CGTATAAC | PubMed | 1g2f_F(5.17e-03) |
TAAAT | PubMed | 1g2f_F(6.15e-03) |
AATAAAAG | PubMed | 1g2f_F(2.84e-05) |
TATAGATA | PubMed | 1g2f_F(4.76e-03) |
TATAAT | PubMed | 1g2f_F(1.40e-04) |
TAAAA | PubMed | 1g2f_F(1.10e-05) |
TATAAGC | PubMed | 1g2f_F(1.29e-03) |
TATAAACG | PubMed | 1g2f_F(3.20e-05) |
TAAAAGT | PubMed | 1g2f_F(1.17e-03) |
TATAAGAG | PubMed | 1g2f_F(2.16e-04) |
site | source | matches (E-value) |
Dendrogram of similar interfaces ?
matrix format--RGDC--SCHG----DC--SANA----WC--SCVG--RG-- L +--------------------------5v3g_A ! ----QA--TCNA----QAHTTT--QA--TTLAHGTCDTRG-- L ! +1g2d_F ! +-5 ----KG--WTKA--------HCHGRG--TA--ACNA--KGRG L ! ! ! +1tf6_A ! +--------6 +-1 --NGKT--WTKG--------HTHGRGTGTT--ACNA--KGRG L ! ! ! +1tf3_A ! +--8 ! ----RGSTDAHARG--RGSTDCHGTT--RG--DAEG--RG-- L ! ! ! +5kl3_A ! +-10 ! ------------KT--EC--SCKGRG--LT--FCNA------ L +-16 ! ! +---------1ubd_C ! ! +-11 ! --------------RGST--YGYC----QC--TGSTRGYT-- ! ! ! ! +------------4is1_C ! ! +---13 ! ----RA----NC------ATSGDCKG--DCPTSGSARTKG-- L ! ! ! ! +-------------2gli_A ! ! +-14 ! ----EC--SCKGRG----TCYCKARG--QA----TC------ ! ! ! ! +----------------5yeg_A ! ! ! ! ----------YG----WT--WTSTET--FTVASGDCSART-- L ! ! ! +---------------------6a57_A ! ! ! ----RGSTDTEGRG--RGSGDCHGTT--RG--DAEG--RG-- L ! +--15 +----------4x9j_A +-17 ! ! ----DA--SCHGRGRGDC--SCNA----NCKTSAHG--RG-- L ! ! ! +----9 +5ei9_F ! ! ! ! ! +-3 --------STQTLTITST--STHTRG--RG----EA--RA-- L ! ! ! ! +----------4 +5v3j_F ! ! +-----12 ! ----VT----NARG------ETTG----YG--ST-------- ! ! ! +6e94_A ! ! ! FA--RGSGSCTCTAHCQA--STDCKT--QASGSANAIGTT-- L -18 ! ! +2kmk_A ! ! +---------------2 ----EC--SGKGRG--DG--YCKGRG--QA----TC------ L ! ! +5k5h_A ! ! ----EC--SCKGRG----TCYCKARGTCQAST--TC------ L ! ! +-------5yef_B ! +------------------7 ----DC--YCKGRG--QA----TC----RC--SCDC--VT-- L ! +-------5k5i_A ! ----KT--STHT----RG--DAQARG--RGSTDCHG--TT-- L +-----------------------------6b0o_A |
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updated Fri Sep 13 15:37:08 2024