Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS
redundant complexes6t79_G 6t7c_G 7peu_Q 7pev_G 7pew_G 7pex_c 7pfc_G 7pfv_C 7pfw_g 7pfx_Q 6t7b 6t7d 7pet 7pey 7pez 7pf0 7pf2 7pf3 7pf4 7pf5 7pf6 7pfa 7pfd 7pfe 7pff 7pft 7pfu
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC                          +--6qld_f    
                           +----3 
  LTRC                     !    +--3kwq_E    
                      +----4 
  --RA                !    !        +7xsx_a    
                      !    !      +-1 
  LT--             +--5    +------2 +7ywx_E    
                   !  !           ! 
  --RG             !  !           +7uv9_E    
                 +-6  ! 
  LGRA   L       ! !  +------------8he5_a    
               +-7 ! 
  LARG         ! ! +---------------7unc_a    
             +-8 ! 
  LC--       ! ! +-----------------8bvw_e    
           --9 ! 
  --RT       ! +-------------------8cww_A    
             ! 
  --RT       +--------------------8siy_G

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updated Tue Dec 19 14:52:39 2023