Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS
redundant complexes6t79_G 6t7c_G 7peu_Q 7pev_G 7pew_G 7pex_c 7pfc_G 7pfv_C 7pfw_g 7pfx_Q 6t7b 6t7d 7pet 7pey 7pez 7pf0 7pf2 7pf3 7pf4 7pf5 7pf6 7pfa 7pfd 7pfe 7pff 7pft 7pfu
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT----                               +8u14_G    
                          +--------------1 
  --RG----          +----11              +8ox0_C    
                    !     !  
  --RA--RA          !     +--------------6a5l_g    
                    !  
  --RG----          !                     +8txv_G    
                 +-14      +--------------2 
  --RG----       !  !      !              +5x0y_G    
                 !  !  +--10  
  --RT----       !  !  !   !               +8smw_G    
                 !  !  !   !             +-3 
  --RA----       !  +-12   +-------------5 +1zla_C    
                 !     !                 ! 
  --RG----       !     !                 +8jla_C    
               -15     !  
  LCRT----       !     +------------------8hr1_E    
                 !  
  --RG--RG       !               +-------8kcb_A    
                 !   +-----------8 
  LARG----       !   !           +-------7unc_a    
                 !   !  
  --RC----       +--13               +---6qld_f    
                     !             +-6 
  ----RA--           !       +-----7 +---6g0l_D    
                     !       !     ! 
  LC------           +-------9     +-----8bvw_e    
                             ! 
  --RA----                   !           +7xsx_a    
                             +-----------4 
  --RT----                               +8grq_A    
               

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updated Sun Aug 3 13:25:35 2025