Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS
redundant complexes6t79_G 6t7c_G 7peu_Q 7pev_G 7pew_G 7pex_c 7pfc_G 7pfv_C 7pfw_g 7pfx_Q 6t7b 6t7d 7pet 7pey 7pez 7pf0 7pf2 7pf3 7pf4 7pf5 7pf6 7pfa 7pfd 7pfe 7pff 7pft 7pfu
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT----                                  +8u14_G    
                             +--------------1 
  --RG----                   !              +5x0y_G    
                          +-10  
  --RT----                !  !              +8smw_G    
                       +-11  +--------------2 
  --RG----             !  !                 +8ox0_C    
                    +-12  !  
  --RA--RA          !  !  +--------------6a5l_g    
                    !  !  
  --RG----          !  +-----------------8jla_C    
                 +-14  
  --RG----       !  !                    +8txv_G    
                 !  !        +-----------3 
  --RA----       !  +--------9           +1zla_C    
                 !           ! 
  LCRT----     -15           +-----------8hr1_E    
                 !  
  --RG--RG       !                +------8kcb_A    
                 !   +------------7 
  LARG----       !   !            +------7unc_a    
                 !   !  
  --RC----       +--13               +---6qld_f    
                     !           +---6 
  ----RA--           !           !   +---6g0l_D    
                     +-----------8 
  --RA----                       !         +7xsx_a    
                                 !       +-4 
  LC------                       +-------5 +8bvw_e    
                                         ! 
  --RT----                               +8grq_A    
               

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updated Wed Dec 18 05:48:54 2024