Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS
redundant complexes6t79_G 6t7c_G 7peu_Q 7pev_G 7pew_G 7pex_c 7pfc_G 7pfv_C 7pfw_g 7pfx_Q 6t7b 6t7d 7pet 7pey 7pez 7pf0 7pf2 7pf3 7pf4 7pf5 7pf6 7pfa 7pfd 7pfe 7pff 7pft 7pfu
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT--                            +----------8u14_G    
                          +---------3 
  LARG--               +--4         +----------7unc_a    
                       !  ! 
  --RG--               !  +--------------------8txv_G    
                 +-----5 
  --RC--         !     !                   +---6qld_f    
                 !     +-------------------2 
  --RA--       +-6                         !   +7xsx_a    
               ! !                         +---1 
  LC----       ! !                             +8bvw_e    
             --7 ! 
  --RT--       ! +-----------------------------8smw_G    
               ! 
  --RGRG       +-----------------------------8kcb_A

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updated Fri Sep 13 23:43:57 2024