interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes6uph_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --RG----          +-----------------------------5x0y_G    
                 +-11  
  --RG----       !  +-----------------------------8ox0_C    
                 !  
  --RT----       !                             +8u14_G    
                 !                 +-----------1 
  --RA----       !            +----6           +1zla_C    
                 !            !    ! 
  LCRT----     -12          +-7    +-----------8hr1_E    
                 !          ! ! 
  --RT----       !          ! !                +8smw_G    
                 !      +---9 +----------------3 
  --RG----       !      !   !                  +8jla_C    
                 !      !   ! 
  --RG----       !      !   !                  +8txv_G    
                 !      !   +------------------4 
  --RA--RA       +-----10                      +6a5l_g    
                        !  
  --RG--RG              !               +------8kcb_A    
                        !    +----------5 
  ----RA--              !    !          +------6g0l_D    
                        +----8 
  --RA----                   !                 +7xsx_a    
                             +-----------------2 
  --RT----                                     +8grq_A    
               

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updated Wed Dec 18 05:54:31 2024