3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF A YEAST CENTROMERIC NUCLEOSOME AT 2.7 ANGSTROM RESOLUTION
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes6uph_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RA--RA                                   +6a5l_g    
                              +--------------2 
  --RG----               +----7              +8txv_G    
                         !    ! 
  --RA----          +---10    +--------------1zla_C    
                    !    !  
  --RG----          !    +-------------------8jla_C    
                    !  
  --RT----       +-11             +----------8smw_G    
                 !  !     +-------5 
  LCRT----       !  !     !       +----------8hr1_E    
                 !  !     ! 
  --RG--RG       !  +-----9             +-----8kcb_A    
                 !        ! +-----------4 
  ----RA--       !        ! !           +-----6g0l_D    
               -12        +-8 
  --RA----       !          !                 +7xsx_a    
                 !          +-----------------3 
  --RT----       !                            +8grq_A    
                 !  
  --RT----       !                         +8u14_G    
                 !          +--------------1 
  --RG----       +----------6              +5x0y_G    
                            ! 
  --RG----                  +--------------8ox0_C

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updated Sun Aug 3 13:29:57 2025