7lya_G : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE WITH LINKED HISTONE PROTEINS H2A AND H2B
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 8upf_ABCDEFGH
redundant complexes	8upf_C 7lyb 7lyc
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7lya_G interface=32, sakaktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk

  
  --RT----                                 +8u14_G    
                            +--------------1 
  --RG----                  !              +5x0y_G    
                          +-6 
  --RT----                ! !              +8smw_G    
                        +-7 +--------------2 
  --RG----              ! !                +8ox0_C    
                        ! ! 
  --RA--RA              ! +---------------6a5l_g    
                      +-8 
  --RG----            ! !                 +8txv_G    
                      ! !     +-----------3 
  --RA----       +----9 +-----5           +1zla_C    
                 !    !       ! 
  --RT----       !    !       +-----------8grq_A    
                 !    ! 
  --RG----     -11    +------------------8jla_C    
                 !  
  --RG--RG       !                +------8kcb_A    
                 !   +------------4 
  ----RA--       +--10            +------6g0l_D    
                     !  
  LCRT----           +-------------------8hr1_E

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updated Wed Dec 18 09:40:48 2024