Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCENP-A NUCLEOSOME IN COMPLEX WITH CENP-C
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes7on1_abcdefgh
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RA----                                +1zla_C    
                     +--------------------4 
  --RG----           !                    +8ox0_C    
                     !  
  --RG----       +--14                      +8txv_G    
                 !   !       +--------------1 
  --RG----       !   !  +---10              +5x0y_G    
                 !   !  !    !  
  --RG----       !   +-12    +--------------8jla_C    
                 !      !  
  --RT----       !      !                   +8smw_G    
               -15      +-------------------5 
  --RA--RA       !                          +6a5l_g    
                 !  
  --RT----       !   +--------------------8u14_G    
                 !   !  
  --RG--RG       !   !            +-------8kcb_A    
                 !   !       +----8 
  --RT----       !   !       !    +-------8hr1_E    
                 +--13  +----9 
  --RA----           !  !    !              +7xsx_a    
                     !  !    !            +-2 
  LARG----           !  !    +------------3 +7unc_a    
                     !  !                 ! 
  --RT----           +-11                 +8grq_A    
                        !  
  --RC----              !             +---6qld_f    
                        !           +-6 
  ----RA--              +-----------7 +---6g0l_D    
                                    ! 
  LC------                          +-----8bvw_e    
               

home
updated Sun Aug 3 17:26:10 2025