8eue_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CLASS1 OF THE INO80-NUCLEOSOME COMPLEX
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8eue_ABCDEFHK
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8eue_E interface=5,30,81, kkphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakRvtimpkdiqlarrirgera

  
  --RA------LT------RG                                    +8eue_E    
                                                          ! 
  --RT--RG------------                          +---------3   +6pww_K    
                                                !         ! +-1 
  HGRTYT----------RG--                          !         +-2 +7k6p_A    
                                    +-----------6           ! 
  HTRA------LT----RC--              !           !           +5xm1_A    
                                    !           ! 
  --RGYA----------RT--              !           !    +----7wlr_E    
                                    !           +----4 
  ----------------RA--            +-8                +----7xsx_a    
                                  ! ! 
  --------RAAANA------            ! !             +-------1jfi_B    
                                  ! !         +---5 
  --------------IT----          +-9 +---------7   +-------6r8y_H    
                                ! !           ! 
  ----------------RT--          ! !           +-----------7lyb_G    
                             +-10 ! 
  ----------------RA--       !  ! +-----------------------6t7a_C    
                           -11  !  
  ----------------RG--       !  +-----------------------7e9c_G    
                             !  
  ----------------RG--       +-------------------------5t5k_E

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updated Wed Dec 20 02:26:31 2023