structure name | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX (PROTEIN NUCLEAR PROTEIN EBNA1) |
reference | Bochkareva et al. |
source | Human herpesvirus 4 |
experiment | X-ray (resolution=2.20, R-factor=0.208) |
structural superfamily | Viral DNA-binding domain; |
sequence family | Epstein Barr virus nuclear antigen1, DNAbi; |
multimeric complexes | 1b3t_AB 6pw2_ABCD 6pw2_IKL 7u1t_ABCD 8dlf_ABCD |
redundant complexes | 6pw2 |
reference complex | 7u1t_B |
links to other resources | NAKB ![]() |
protein sequence | |
interface signature | KWFRNKFKTYNR |
Estimated binding specificities ?
readout + contact | ![]() |
A | 7 0 0 96 75 7 9 C | 7 0 0 0 7 7 73 G | 75 96 96 0 7 73 7 T | 7 0 0 0 7 9 7scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: EBNA-1 | ||
TAGCATATGCTA | PubMed | 1b3t_AB(1.85e-11), 6pw2_IJKL(1.59e-09) |
Dendrogram of similar interfaces ?
matrix formatWCFT----KG--KGTAYCNGRT-- L +5t7x_B +------------------1 WGFTRTNTKGFTKTTGYCNGRT-- L +------3 +1b3t_A ! ! --------KG-------------- L --4 +------------------4uzb_B ! ----------------KGCGFT-- L ! +-----------2bop_A +-------------2 ----------------------RC L +-----------2itl_B |
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updated Mon Dec 16 17:39:39 2024