interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2A.1)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3o62_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5xf6_ABCDEFGH
redundant complexes1kx3_C 1kx4_G 3lel_M 5xf6_G 3b6f 3b6g 3o62 4j8u 4j8v 4j8w 4j8x 4xuj 5cp6 5dnm 5dnn
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG           +-----------------------------8txv_G    
             +-1 
  RT       +-2 +-----------------------------8u14_G    
           ! ! 
  RA     --3 +-----------------------------7xsx_a    
           ! 
  RT       +-----------------------------8smw_G    
         

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updated Fri Sep 13 15:45:05 2024