interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2A.1)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3o62_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5xf6_ABCDEFGH
redundant complexes1kx3_C 1kx4_G 3lel_M 5xf6_G 3b6f 3b6g 3o62 4j8u 4j8v 4j8w 4j8x 4xuj 5cp6 5dnm 5dnn
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--RG----            +-----------------------------8ox0_C    
                      +-9 
  RA--RG----       +-10 +-----------------------------8jla_C    
                   !  !  
  ----RG----       !  +-----------------------------5x0y_G    
                   !  
  ----RA----       !                   +---------1zla_C    
                   !               +---3 
  ------RA--     -11               !   +---------6g0l_D    
                   !           +---5 
  ----RT----       !           !   !             +8smw_G    
                   !      +----6   +-------------2 
  ----RA--RA       !      !    !                 +6a5l_g    
                   !      !    ! 
  ----RG----       !      !    +-----------------8txv_G    
                   +------8 
  ----RT----              !          +-----------8u14_G    
                          !    +-----4 
  --LCRT----              !    !     +-----------8hr1_E    
                          +----7 
  ----RA----                   !                 +7xsx_a    
                               +-----------------1 
  ----RT----                                     +8grq_A    
                 

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updated Sun Aug 3 05:42:07 2025