| structure name | PIT-1 MUTANT/DNA COMPLEX (PROTEIN PIT-1) |
| reference | Leon-Del-Rio et al. 'Genes 11 198 1997 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.30, R-factor=?) |
| structural superfamily | lambda repressor-like DNA-binding domains;Homeodomain-like; |
| sequence family | Pou domain Nterminal to homeobox domain; |
| multimeric complexes | 1au7_AB 5wc9_AB 5wc9_EF |
| redundant complexes |  5wc9_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | QTRRVQ |
Estimated binding specificities ?
| readout + contact |  |
A | 96 6 0 16 78 0 96 0 75 0 96 C | 0 13 0 6 6 0 0 0 6 96 0 G | 0 9 96 6 6 0 0 0 9 0 0 T | 0 68 0 68 6 96 0 96 6 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PIT-1 | ||
| TATNCAT | PubMed | 1au7_A(2.52e-06), 1au7_AB(7.60e-06), 5wc9_AB(2.03e-03), ... (total=4) |
| TATAA | PubMed | 1au7_A(5.59e-03), 1au7_AB(1.00e-02) |
| AATNCAT | PubMed | 1au7_A(1.13e-03), 1au7_AB(2.53e-03), 5wc9_AB(2.03e-03), ... (total=4) |
Dendrogram of similar interfaces ?
matrix format----------RA--------ITQTNAMG---- L +5zjt_E +--------------1 ----------RT--------NT--NAIARG-- L ! +1b72_B ! ----------RA------KGSAQA-------- L +----------5 +6j5b_C ! ! +-------2 --------RCRT--------NT--NAITRG-- ! ! ! +5zjt_B ! +------4 --------------------IA--NA------ +---6 ! +4qtr_D ! ! +------3 ----------RT--------ITQCNAACRG-- L ! ! +6a8r_A +-7 ! ----------RTSTVC--KGDCRG-------- L ! ! +-------------------------1w0t_A +-8 ! ----------RT------KTIAQCNA----RT L ! ! +-----------------------------1ig7_A +-9 ! ----------RT--------IAKGNA------ L ! ! +-----------------------------2hdd_A +-10 ! ----------RT--------NT--NA--RG-- L ! ! +-----------------------------1b8i_B +-11 ! --------------------NCITNARGRG-- L ! ! +-----------------------------6fqq_E -12 ! ----------RT--RTQT--ITQANAVTKT-- L ! +-----------------------------2ld5_A ! NTQASAHT--RT------YCNAATNAKG---- L +-----------------------------1ic8_B |
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updated Fri Sep 13 15:25:09 2024