| structure name | CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA (HOMEOBOX PROTEIN ARISTALESS) |
| reference | Miyazono et al. 'Embo 29 1613 2010 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=2.70, R-factor=0.234) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 3a01_AB 3a01_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRQVQN |
Estimated binding specificities ?
| contact |  |
A | 0 11 96 96 24 24 67 67 C | 0 9 0 0 24 24 9 9 G | 0 9 0 0 24 24 9 11 T | 96 67 0 0 24 24 11 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: aristaless | ||
| TAATTAA | PubMed | 3a01_F(1.69e-04), 3a01_AB(5.68e-10) |
Dendrogram of similar interfaces ?
matrix formatKGRT------------IAQCNAYA--RT L +1nk2_P +---------------------1 RCRT------------NT--NAITRG-- ! +5zjt_B +-----5 --------------RCVACTNAQA---- L ! ! +--------7xrc_C ! +-------------3 --RT----STVC--KGDCRG-------- L +-6 +--------1w0t_A ! ! RTRT------------IAKGNA------ L ! ! +---------------6m3d_C ! +------------4 --RT----------FTYAQTNAATRG-- L +-7 ! +----6ryd_F ! ! +----------2 --------------RTVAITNAMCRG-- L ! ! +----1yrn_A +-8 ! --RA------------YAQTNAAARG-- L ! ! +-----------------------------6wig_A --9 ! ----QGYC-------------------- ! +-----------------------------6u7t_A ! ------STRGQTQAST------------ L +-----------------------------7t8k_B |
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updated Thu Dec 22 18:47:33 2022