| structure name | CRYSTAL STRUCTURE OF PKZ ZALPHA IN COMPLEX WITH DS(CG)6 (HEXAGONAL FORM) (Protein kinase containing Z-DNA binding domains) |
| reference | Athanasiadis et al. 'Nucleic 41 9924 2013 |
| source | Danio rerio |
| experiment | X-ray (resolution=2.00, R-factor=0.192) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Adenosine deaminase zalpha domain; |
| multimeric complexes | 4lb5_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format----------TT--PTTCSTNT------------------------RT-- L +-----------------------------4lln_I +-16 --------NGLTKTPTSTTT--------RT----------------RT-- L ! +-----------------------------7el3_B ! ----------NTHG--RTYTPT------------------------RT-- L ! +----------6qil_A ! +---------2 --------------------NAST--HT----STLT-------------- L ! +-4 +----------7cby_C ! ! ! RT------LTNTHGTA--YTRG----------------------QA---- ! ! +--------------------2efw_A ! +-6 --KAFA----------------------------------YANAKTFGMC ! ! ! +-----------3aaf_B ! ! ! +--------3 ------------------NAST--RGHTNT--STLT-------------- L ! +-7 +-5 +-----------7fj2_B ! ! ! ! ------------------NAST--RTHT----ST---------------- ! ! ! +--------------------3co7_C ! +-8 ! ----------------------------------------------NG-- +-17 ! ! +-----------------------7k63_U ! ! +-9 ! ----------------QTST--RGHTNT--STLA---------------- L ! ! ! ! +------------------------2hdc_A ! ! ! ! ------RC--------------------------------------SG-- ! ! +-10 +-------------------------7cow_T ! ! ! ! --------------------------YGRG-------------------- ! ! ! ! +---4wcg_A ! ! +-11 +-----------------------1 --------------TTHT--KG----------------RC---------- L ! ! ! ! +---7b0c_A ! ! +-12 ! --------------------RC----YG----------KT---------- +-18 ! ! ! +---------------------------2acj_B ! ! ! +-13 ! --------------KGTA--TA------RG-------------------- L ! ! ! ! ! +----------------------------1xsd_A ! ! ! +-14 ! --------YAKTPTPG--YTRG---------------------------- L ! ! ! ! ! +----------------------------4mtd_D ! ! +-15 ! ------RA--ST--ECTTRAKA---------------------------- +-19 ! ! +----------------------------7oz3_B ! ! ! ! ------ETNTSCRGHC--RT----------------------QA------ ! ! ! +----------------------------5d4s_B ! ! ! --------ET--RGTCTGSTRG------------------------KT-- L -20 ! +-----------------------------6q2b_B ! ! ------------RCTT--TTHT--LA------------------------ L ! +-----------------------------7e1b_B ! ----------STRGQTQAST----------------HG------------ L +-----------------------------7t8k_B |
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updated Fri Sep 13 18:28:06 2024