| structure name | X-RAY STRUCTURE OF REB1-TER COMPLEX (DNA-binding protein reb1) |
| reference | Escalante et al. |
| source | Schizosaccharomyces pombe |
| experiment | X-ray (resolution=2.70, R-factor=0.212) |
| structural superfamily | Homeodomain-like; |
| sequence family | Myblike DNAbinding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRKKYHRRNRDRDRLRY |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 4 64 8 0 92 0 0 0 4 4 96 0 C | 4 0 68 12 8 0 0 96 96 96 4 0 0 96 G | 4 96 12 12 12 0 4 0 0 0 4 4 0 0 T | 88 0 12 8 68 96 0 0 0 0 84 88 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: REB1 | ||
| CCGGGTAA | PubMed | 5eyb_B(9.48e-05) |
| GTCCGGGTAATGC | PubMed | 5eyb_B(4.78e-13) |
| GCATTACCCGGAC | PubMed | 5eyb_B(4.78e-13) |
| CGGGTAA | PubMed | 5eyb_B(7.92e-06) |
| GNGCCGGGGTAACNC | PubMed | 5eyb_B(6.44e-03) |
Dendrogram of similar interfaces ?
matrix format----------------------------KGRTEC--------NAKGNANTST------------------ +-----------------------------1h89_C ! --NARTQT--EC----------------NG--NA------------------------------------ L ! +2kdz_A ! +-----------------1 ----KT--RCEC--NA----------DCNAKANAHTNTSCTC---------------------------- L ! ! +1msf_C +-7 +-----4 ----KG--RAEA--------------DCNAKGNA--NTST------------------------------ L ! ! ! ! +------------3zqc_A ! ! ! +----2 ----------------------------------------------------RTRCET----SAQAKT-- L ! ! +--5 +------------6qec_A ! ! ! ! ----KG--RGLC----------------NAKGNA--NTTC------------------------------ L +-8 ! ! ! +--------------6kks_A ! ! +--6 +--------3 --------------------RT----STVCKGDC--RG-------------------------------- L ! ! ! +--------------1w0t_A ! ! ! ----------------------HGSGRGHG------RT-------------------------------- L +-9 ! +--------------------------1tc3_C ! ! ! ----------------------------------------------------RARCET----SAQAKG-- L ! ! +-----------------------------5lxu_A +-10 ! ----------------------------------------------------RA------KGSA----KT L ! ! +-----------------------------7d3t_D +-11 ! ----------------------------------------------------RTSTVTMCKGDCRGTA-- L ! ! +-----------------------------1iv6_A -12 ! RT------FTYAQTNAATRG-------------------------------------------------- L ! +-----------------------------6ryd_F ! --------------------RT------VTKGDC--RGTA------------------------------ +-----------------------------7c4p_A |
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updated Fri Sep 13 19:31:48 2024