| structure name | STRUCTURE OF MYCOBACTERIUM SMEGMATIS HELICASE LHR BOUND TO SSDNA AND AMP-PNP (ATP-dependent DNA helicase) |
| reference | Jacewicz et al. 'Nucleic 46 442 2018 |
| source | Mycobacterium smegmatis |
| experiment | X-ray (resolution=2.80, R-factor=0.199) |
| structural superfamily | P-loop containing nucleoside triphosphate hydrolases; |
| sequence family | DEAD/H associated; DEAD/DEAH box helicase; Helicase conserved Cterminal domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSPHRVTIPRWDSRASF |
Estimated binding specificities ?
| contact |  |
A | 45 0 24 0 0 0 0 0 7 0 4 C | 16 96 24 0 0 96 0 0 74 0 7 G | 16 0 24 0 96 0 0 96 8 96 81 T | 19 0 24 96 0 0 96 0 7 0 4scan! |
Dendrogram of similar interfaces ?
matrix format------------------RT--SCPGHC----------------------------------RGVGTGITPTRCWTDCSCRCAASCFT L +---------------5v9x_A +-------2 ----DC----------------NT---------------------------------------------------------------- +--3 +---------------6znp_A ! ! --RC--HC------------QT------------------------------------------------------------------ +-4 +-----------------------6m6b_M ! ! --------SG------WGRA--ICKC--HT---------------------------------------------------------- +-5 +--------------------------7aud_E ! ! ----------------------VCKC-------------------------------------------------------------- +-6 +---------------------------4u7d_A ! ! ----------------------ICKC-------------------------------------------------------------- ! ! +4o3m_A +-7 +----------------------------1 RG----------QC--------IC---------------------------------------------------------------- L ! ! +5n8r_B +-8 ! ----------RC---------------------------------------------------------------------------- ! ! +-----------------------------1z63_A +-9 ! ------------------------------------QTNAST--RGHTNT--STLA-------------------------------- L ! ! +-----------------------------2hdc_A +-10 ! --------------------------------------------RC----YG--------KT-------------------------- ! ! +-----------------------------2acj_B +-11 ! ----QG------HCRT------------------------------------------------------------------------ ! ! +-----------------------------6gen_M +-12 ! ----EG---------------------------------------------------------------------------------- ! ! +-----------------------------6iy2_O +-13 ! --------------------------------------------------YGRG---------------------------------- ! ! +-----------------------------4wcg_A +-14 ! ------------------------------------------NAST--RGHTNT--STLT---------------------------- L ! ! +-----------------------------7fj2_B -15 ! ------------------------------------------NAST--RGHT----STLT---------------------------- L ! +-----------------------------7cby_C ! ------------------------------YAKTPTPG----YTRG------------------------------------------ L +-----------------------------4mtd_D |
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updated Fri Sep 13 20:36:47 2024