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legend  pdf

structure nameCRYSTAL STRUCTURE OF FOXC2 DBD BOUND TO DBE2 DNA
(FORKHEAD BOX PROTEIN C2)
referenceLiang et al. 'Nucleic 47 3752 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.40, R-factor=0.230)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes6o3t_AB
redundant complexes6o3t_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSRHSL

Estimated binding specificities ?

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# IC=5.446 IC/col=0.908 n_of_columns=6 specificity:   
A |  10   8  19   0   0  96
C |   8  17   8   0   0   0
G |   0  61   8   0   0   0
T |  78  10  61  96  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --------------NAST--RGHT--STFT----------RT   L             +--------------------1vtn_C    
                                                           +-6 
  --------RGSTRTSTHG----------------RA------   L           ! !                   +3zpl_B    
                                                           ! +-------------------1 
  --------------RC------YG--------KT--------             +-7                     +2acj_B    
                                                         ! ! 
  --TT------KATTQTTG----LTRT----KA----FTYT--   L         ! !              +-------2p7c_B    
                                                         ! +--------------4 
  ----------DCKT--RG----RGYA----KA----------   L         !                +-------5jvt_A    
                                                      +--9 
  --------------NAST--RGHT--STLT------------   L      !  !                   +-----7cby_C    
                                                      !  !                 +-2 
  --------------NAST--RTHT--STLT------------   L      !  ! +---------------3 +-----4lg0_A    
                                                      !  ! !               ! 
  RT--LANTHGTTETYTRG------------------------   L   +-10  +-8               +-------1f4k_B    
                                                   !  !    ! 
  --------------NAST--RTHT--ST--------------   L   !  !    !             +---------3l2c_A    
                                                   !  !    +-------------5 
  --------------RGNT--RGSTAT--RA------------   L -11  !                  +---------2o6g_G    
                                                   !  !  
  ------------KT--RGAT--RGNT----------------   L   !  +---------------------------8smh_F    
                                                   !  
  ----------------------YG------------------       +-----------------------------3eyi_B    
                                                 

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updated Mon Jun 29 22:10:57 2026