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legend  pdf

structure nameCRYSTAL STRUCTURE OF FOXC2 DBD BOUND TO DBE2 DNA
(FORKHEAD BOX PROTEIN C2)
referenceLiang et al. 'Nucleic 47 3752 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.40, R-factor=0.230)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes6o3t_AB
redundant complexes6o3t_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSRHSL

Estimated binding specificities ?

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# IC=5.432 IC/col=0.905 n_of_columns=6 specificity:   
A |   0  96  96  67   0  67
C |   0   0   0   9  67  11
G |   0   0   0   9   9   9
T |  96   0   0  11  20   9
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Dendrogram of similar interfaces ?

matrix format
  
  --------------NAST--RGHT--STLT--------   L                          +------7cby_C    
                                                                   +--1 
  --------------NAST--RTHT--ST----------   L               +-------2  +------3l2c_A    
                                                           !       ! 
  --------RGSTRTSTHG--------------RA----   L        +------3       +---------3zpl_B    
                                                    !      ! 
  --TT------KATTQTTG----LTRT----KA--FTYT   L      +-4      +-----------------2p7c_B    
                                                  ! ! 
  RT--LANTHGTTETYTRG--------------------   L   +--5 +------------------------1f4k_B    
                                               !  ! 
  ------------KT--RGAT--RGNT------------   L --6  +--------------------------8smh_F    
                                               ! 
  ----------------------YG--------------       +-----------------------------3eyi_B    
                                             

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updated Sun Aug 3 10:54:39 2025