3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameHDAC-PC-NUC
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4x23_ABCDEFG 4x23_KLMNOPQ 4xzq_ABCDEFGH 4ys3_ABCDEFGH 6z6p_ABCDEFGHM 6z6p_KN 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7ea5_ABCDEFGH 7ea8_ABCDEFGH 7ktq_ABCDEFGH 7xd1_ABCDEFGH 8grq_ABCDEFGH 8ieg_CDEFGHKL 8wg5_ABCDEFGH
redundant complexes4x23 4xzq 4ys3 7ccq 7ccr 7ea5 7ea8 7ktq 7xd1 8grq 8ieg 8wg5
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RG----       +-----------------------------8jla_C    
                 !  
  --RT----       !                               +8u14_G    
                 !                             +-1 
  --RA----       !                   +---------4 +1zla_C    
                 !                   !         ! 
  --RG----       !            +------5         +5x0y_G    
               -10            !      ! 
  --RA--RA       !          +-7      +---------6a5l_g    
                 !          ! ! 
  ----RA--       !     +----8 +----------------6g0l_D    
                 !     !    ! 
  --RG----       !     !    !                  +8txv_G    
                 !     !    +------------------2 
  --RG----       +-----9                       +8ox0_C    
                       ! 
  --RA----             !                       +8rbx_M    
                       !        +--------------3 
  --RT----             +--------6              +8grq_A    
                                ! 
  LCRT----                      +--------------8hr1_E

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updated Sun Aug 3 14:38:29 2025