interface graph thumbnail
legend  pdf

structure nameFOXK1-ELF1-HETERODIMER BOUND TO DNA
referenceMorgunova et al. 'To ? ? ?
experimentX-ray (resolution=2.69, R-factor=0.274)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes8bzm_ABJ 8bzm_EHI
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKNSRHNS

Estimated binding specificities ?

readout + contactlogo
# IC=5.766 IC/col=0.961 n_of_columns=6 specificity:   
A |   0  96  96  54  13  96
C |   0   0   0  13  54   0
G |   0   0   0  16  16   0
T |  96   0   0  13  13   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --------------NAST--RGHT--STLT------   L                          +------7cby_C    
                                                                  +-1 
  ----ST--------NAST--RTHT--ST--------   L                +-------2 +------3l2c_A    
                                                          !       ! 
  --LA--NTHGTTETYTRG------------------   L            +---3       +--------1f4k_B    
                                                      !   ! 
  --------RGSTRTSTHG--------------RA--   L      +-----4   +----------------3zpl_B    
                                                !     ! 
  TT--------KATTQTTG----LTRT----KA--FT   L   +--5     +--------------------2p7c_B    
                                             !  ! 
  ------------KT--RGAT--RGNT----------   L --6  +--------------------------8smh_F    
                                             ! 
  ------------SA------------------RG--       +-----------------------------2xcr_U    
                                           

home
updated Sat Sep 14 09:18:52 2024