| structure name | CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A HIGH AFFINITY DNA FRAGMENT (CAATENHANCER BINDING PROTEIN BETA) |
| reference | Tahirov et al. |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=1.80, R-factor=0.232) |
| structural superfamily | Leucine zipper domain; |
| sequence family | Basic region leucine zipper; bZIP transcription factor; |
| multimeric complexes | 1gtw_AB 1gu4_AB 1gu5_AB 1h88_ABC 1h8a_ABC 1io4_ABC 2e42_AB 2e43_AB 7upz_AB |
| redundant complexes | 1gtw_A
1gu5_A
1h8a_B
1io4_A
2e42_B
2e43_B
 7upz_A
1h88
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNNAVSR |
Estimated binding specificities ?
| readout + contact |  |
A | 54 0 0 0 16 C | 29 0 0 0 54 G | 0 0 0 96 13 T | 13 96 96 0 13scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: EBPBETA | ||
| CCAAT | PubMed | 1gu4_B(1.98e-04) |
| TTGC|GTCA | PubMed | 1gu4_B(3.92e-03), 1h88_A(5.94e-03), 2e42_B(3.44e-03), ... (total=4) |
| TGAC|GCAA | PubMed | 1gu4_B(3.92e-03), 1h88_A(5.94e-03), 2e42_B(3.44e-03), ... (total=4) |
Dendrogram of similar interfaces ?
matrix formathome
updated Thu Dec 22 17:33:34 2022