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structure nameCRYSTAL STRUCTURE OF THE HUMAN FOXN3 DNA BINDING DOMAIN IN COMPLEX WITH A FORKHEAD DNA SEQUENCE
(Forkhead box protein N3)
referenceHallworth et al. 'Mol. 74 245 2019
sourceHomo sapiens
experimentX-ray (resolution=2.60, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes6ncm_AB
redundant complexes6ncm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSRHS

Estimated binding specificities ?

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# IC=5.582 IC/col=0.930 n_of_columns=6 specificity:   
A |   0   0  12   0  12  96
C |   0   0  12   0  12   0
G |  12  96  12   0  12   0
T |  84   0  60  96  60   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----------------------NAST--RGHT----STLT------   L           +---------------------7cby_C    
                                                            +--6 
  ----------------------NAST--RGHT----STLT------   L        !  !               +-----2c6y_A    
                                                            !  +---------------2 
  ----------------------NAST--RGHTNT--STLT------   L      +-8                  !     +7fj2_B    
                                                          ! !                  +-----1 
  ------------------QTNAST--RGHT----ST----------   L      ! !                        +2hdc_A    
                                                       +-10 ! 
  ------------------SA--------------------------       !  ! +------------------------2xcr_U    
                                                       !  !  
  --------DT--------RCTT----KT------------------   L   !  +-------------------------2o9l_A    
                                                       !  
  ----KAFA--------------------------------KTFGMC       !                        +-----------3aaf_B    
                                                       !                      +-4 
  ----------LT------RT--YTPT--------------------   L   !            +---------5 +-----------6qil_A    
                                                       !            !         ! 
  ----------------------NAST--RTHT----ST--------     -14          +-7         +-------------3co7_C    
                                                       !          ! ! 
  RT--------LT----TA----YTRG--------------------       !        +-9 +-----------------------2efw_A    
                                                       !        ! ! 
  ----------------PTTC--STQC------RA------------   L   !     +-11 +-------------------------1ddn_B    
                                                       !     !  !  
  ------------------KT----RG----RGYA------------   L   !     !  !                +---------3zp5_A    
                                                       !  +-12  +----------------3 
  --------RC------------------------------------       !  !  !                   +---------7cow_T    
                                                       +-13  !  
  --RC------------------------------------------          !  +---------------------------6l9z_S    
                                                          !  
  ------------RASTECTT--RAKA--------------------          +---------------------------7oz3_B    
                                                     

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updated Tue Dec 19 13:49:19 2023