| structure name | CRYSTAL STRUCTURE OF FULL-LENGTH CBNR COMPLEXED WITH THE TARGET DNA COMPLEX (LysR-type regulatory protein) |
| reference | Giannopoulou et al. 'Febs 288 4560 2021 |
| source | Cupriavidus necator |
| experiment | X-ray (resolution=3.60, R-factor=0.237) |
| structural superfamily | Periplasmic binding protein-like II;"Winged helix" DNA-binding domain; |
| sequence family | LysR substrate binding domain; Bacterial regulatory helixturnhelix; |
| multimeric complexes | 7d98_BPQ |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SPPTH |
Estimated binding specificities ?
| contact |  |
A | 0 8 96 8 24 24 8 C | 0 72 0 16 24 24 72 G | 88 8 0 8 24 24 8 T | 8 8 0 64 24 24 8scan! |
Dendrogram of similar interfaces ?
matrix format----SG--PTPG--TT--------------HG-- L +--------------------7d98_Q +-4 ----ATQAPTPG----RGQG------------RT L ! ! +----------4iht_D +--6 +---------2 ------------------------YGRG------ ! ! +----------4wcg_A +-7 ! ----TC--KTTC--KGTCHT--ST---------- L ! ! +---------------------7ve5_B ! ! ----STPTATAT--TTKG---------------- L ! +------------------------5yi2_J +---8 ----ST--PTTC----QG--------RG------ L ! ! +--------------------1f5t_A ! ! ! ------------------RC----YG--KT---- ! +---5 +2acj_B +-9 ! +--------------1 ----------TTHT----KG-------------- L ! ! +-----3 +7b0c_A ! ! ! ------------------RG----YG-------- +-10 ! +--------------1qbj_C ! ! ! FGNATTQGKGIG--VT------------------ L ! ! +----------------------------7bzg_B -11 ! --------RGTCTA----RGNT------------ L ! +----------------------------4fx4_B ! ------------------------YG-------- +----------------------------3eyi_B |
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updated Wed Dec 18 08:36:49 2024