interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
referenceStroud et al. J.Mol.Biol. 393 98 2009
experimentX-ray (resolution=3.59, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
multimeric complexes1le5_AB 1le5_EF 1le9_AB 1le9_EF 1lei_AB 1nfk_AB 1vkx_AB 2i9t_AB 2o61_AB 3gut_ABD 3gut_CF 3gut_EGH 8tkl_AB 8tkm_AB
reference complex1nfk_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCEHK

Estimated binding specificities ?

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# IC=2.926 IC/col=0.585 n_of_columns=5 specificity:   
A |   5  14   9   7   5
C |   8  13  68  82  81
G |  78  15  10   4   6
T |   5  54   9   3   4
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updated Thu Sep 12 17:15:16 2024