interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
referenceStroud et al. J.Mol.Biol. 393 98 2009
experimentX-ray (resolution=3.59, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCEHK

Estimated binding specificities ?

readout + contactlogo
# IC=2.926 IC/col=0.585 n_of_columns=5 specificity:   
A |   5  14   9   7   5
C |   8  13  68  82  81
G |  78  15  10   4   6
T |   5  54   9   3   4
scan!

home
updated Mon Dec 16 20:57:08 2024