interface graph thumbnail
legend  pdf

structure nameRADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 2.1 MGY
(Regulatory protein)
referenceMcGeehan et al.
sourceEnterobacter sp. RFL1396
experimentX-ray (resolution=2.80, R-factor=0.207)
structural superfamilylambda repressor-like DNA-binding domains;
sequence familyHelixturnhelix;
multimeric complexes3clc_ABCD 3s8q_AB 3ufd_AB 4ivz_AF 4iwr_AB 4iwr_EF 4x4b_ABCD 4x4c_ABCD 4x4d_ABCD 4x4e_ABCD 4x4f_ABCD 4x4g_ABCD 4x4h_ABCD 4x4i_ABCD
reference complex3s8q_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEDRTYSRR

Estimated binding specificities ?

contactlogo
# IC=6.409 IC/col=0.916 n_of_columns=7 specificity:   
A |   0   0   0  17   0  78  17
C |   0   0   0  17   0  10  43
G |   0  96   0   8  96   0  17
T |  96   0  96  54   0   8  19
scan!

home
updated Thu Sep 12 20:11:33 2024