Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameCRYO-EM STRUCTURE OF ECMRR-RNAP-PROMOTER INITIAL TRANSCRIBING COMPLEX WITH 4-NT RNA TRANSCRIPT (ECMRR-RPITC-4NT)
experimentNMR
structural superfamilyPutative DNA-binding domain;Probable bacterial effector-binding domain;
sequence familyBacterial transcription activator, effect; MerR family regulatory protein;
multimeric complexes3iyd_ACDFGH 5nss_GJKMN 6jnx_CDFPQ 6ldi_CDFGH 6n4c_ABCDF 6p18_CDFPQ 6pb4_CDFGH 6pb5_CFGH 6pb6_CDFGH 6vu3_ABE 6vyq_ABE 6vyr_ABE 6vys_ABE 6vyt_ABE 6vyu_ABE 6vyw_ABE 6vyx_ABE 6vyy_ABE 6vyz_ABE 6vz2_ABE 6vz3_ABE 6vz5_ABE 6vz7_ABE 6vzj_AE 6x6t_ABE 6x7f_ABE 6x7k_ABE 6x9q_ABE 6xas_BIJ 6xdq_ABE 6xdr_ABE 6xgf_ABE 6xh7_CDFGH 6xh8_CDFGH 6xii_ABE 6xij_ABE 6xl5_CDFGH 6xl9_CDFGH 6xlj_CDFGH 7c17_ACDFGH 7qv9_Mb 7qv9_ce 7vwz_CDFGI 7w5x_ACDFK 8g00_IJ 8igr_ACDGIJL 8igs_IJL 8jo2_CDFHI 8u3b_ACDFGH 8upo_AE 8upr_AE 8uql_ABE 8uqm_ABE 8uqp_AE 8ur0_AE 8urh_AE 8uri_AE 8urx_AE 8ury_AE
reference complex8upo_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKHYY

Estimated binding specificities ?

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# IC=4.531 IC/col=0.503 n_of_columns=9 specificity:   
A |  96   4  24   0   4  44  24  24  12
C |   0   4  24   0   4  16  24  24   4
G |   0  84  24  92  72  16  24  24  68
T |   0   4  24   4  16  20  24  24  12
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updated Tue Dec 17 08:21:27 2024