Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
referenceTachiwana et al. 'Nat 10 576 2019
experimentX-ray (resolution=2.73, R-factor=0.205)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5z23_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  HGRGYG--QC----RG------                                  +7y7i_E    
                                           +--------------1 
  --RG----------RT------                +-11              +8grq_A    
                                        !  !  
  --RT--RG--------------             +-12  +--------------6pww_K    
                                     !  !  
  HARA----LT----RC------             !  !             +3kwq_E    
                                  +-16  +-------------3 
  --RG----LC----RT------          !  !                +8hr1_E    
                               +-18  !  
  --RG----------RT------       !  !  +-----------------7zs9_e    
                               !  !  
  --RG----------RG------       !  +--------------------6iy2_A    
                               !  
  --RT----LA----RG------       !               +---------7unc_a    
                               !        +------9 
  --------------RA----RA       !        !      +---------6a5l_g    
                               !        !  
  --RCYA--------RG------       !     +-14       +---------7ccr_A    
                               !     !  !  +----8 
  --------------RG------     -20     !  !  !    +---------5x0y_G    
                               !     !  !  !  
  ------------------KG--       !     !  +-13             +7nkx_f    
                               !     !     !   +---------5 
  --------------RG------       !     !     !   !         +8jla_C    
                               !  +-17     +--10  
  ------------KT--------   L   !  !  !         !        +-7cvo_A    
                               !  !  !         +--------6 
  --------------RA------       !  !  !                  ! +1zla_C    
                               !  !  !                  +-4 
  --------------RG------       !  !  !                    +8ox0_C    
                               +-19  !  
  HARAYT--LT----RC------          !  +------------------4xzq_E    
                                  !  
  --------------RC------          !                +---7xyf_B    
                                  !   +------------7 
  --------------RT------          !   !            +---7kbd_C    
                                  +--15  
  ----------IT----------              !                +3wkj_D    
                                      +----------------2 
  ----------------RA----                               +6g0l_D    
                             

home
updated Sun Aug 3 10:36:35 2025