5z23_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
reference	Tachiwana et al. 'Nat 10 576 2019
experiment	X-ray (resolution=2.73, R-factor=0.205)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5z23_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5z23_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreicvkftrgvdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirger

  
  --RT----LA----RG--                         +-----------------------------7unc_a    
                                           +-4 
  HGRGYG--QC----RG--                     +-5 +-----------------------------7y7i_E    
                                         ! ! 
  --RG----------RT--                   +-6 +-----------------------------7zs9_e    
                                       ! ! 
  --RT--RG----------                 +-7 +-----------------------------6pww_K    
                                     ! ! 
  --RG----------RG--               +-8 +-----------------------------6iy2_A    
                                   ! ! 
  HARA----LT----RC--             +-9 +-----------------------------3kwq_E    
                                 ! ! 
  HARAYT--LT----RC--          +-10 +-----------------------------4xzq_E    
                              !  !  
  --RCYA--------RG--       +-11  +-----------------------------7ccr_A    
                           !  !  
  ----------------KG       !  +-----------------------------7nkx_f    
                           !  
  --------------RC--     -12                          +--7xyf_B    
                           !            +-------------1 
  --------------RT--       !        +---2             +--7kbd_C    
                           !        !   ! 
  ----------IT------       +--------3   +----------------3wkj_D    
                                    ! 
  ------------KT----   L            +--------------------7cvo_A

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updated Fri Sep 13 21:03:43 2024