Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF FFT3-NUCLEOSOME COMPLEX WITH FFT3 BOUND TO SHL+2 POSITION OF THE NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RC------                                         +7xyf_B    
                                                       +-6 
  ----------KG--                             +---------7 +7nkx_f    
                                             !         ! 
  ------RG------                           +-8         +-8jla_C    
                                           ! ! 
  ------RA------                           ! !          +1zla_C    
                                        +--9 +----------5 
  ------RA----RA                        !  !            +6a5l_g    
                                        !  ! 
  ------RG------                  +----12  +------------5x0y_G    
                                  !     !  
  ------RT------                  !     !               +7kbd_C    
                                  !     +---------------1 
  ------RG------               +-16                     +8ox0_C    
                               !  !  
  IT------------               !  !                     +3wkj_D    
                               !  !   +-----------------2 
  --------RA----               !  +--13                 +6g0l_D    
                               !      !  
  ----KT--------   L           !      +-----------------7cvo_A    
                               !  
  --LT--RC------               !                           +3kwq_E    
                          +---17            +--------------3 
  ------RT------          !    !         +-10              +8grq_A    
                          !    !         !  !  
  --LT--RC------          !    !      +-11  +--------------4xzq_E    
                          !    !      !  !  
  ------RG------          !    !      !  !             +7ccr_A    
                       +-18    !   +-14  +-------------4 
  --LC--RT------       !  !    !   !  !                +8hr1_E    
                       !  !    +--15  !  
  --LA--RG------       !  !        !  +-----------------7unc_a    
                     -19  !        !  
  ------RG------       !  !        +-------------------6iy2_A    
                       !  !  
  ------RT------       !  +----------------------------7zs9_e    
                       !  
  ------RG------       +----------------------------7y7i_E

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updated Sun Aug 3 21:28:04 2025