Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF FFT3-NUCLEOSOME COMPLEX WITH FFT3 BOUND TO SHL+2 POSITION OF THE NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RC------                                                +7xyf_B    
                                                              +-5 
  ----------KG--                                    +---------6 +7nkx_f    
                                                    !         ! 
  ------RG------                                +---8         +-8jla_C    
                                                !   ! 
  ------RG------                                !   +-----------5x0y_G    
                                          +----11  
  ------RT------                          !     !                +7kbd_C    
                                          !     ! +--------------1 
  ------RG------                          !     ! !              +8ox0_C    
                                          !     +-9 
  ------RA------                          !       !             +1zla_C    
                                       +-13       +-------------3 
  ------RA----RA                       !  !                     +6a5l_g    
                                       !  !  
  ----KT--------   L                   !  !                +----7cvo_A    
                                       !  !  +-------------7 
  --------RA----                       !  !  !             +----6g0l_D    
                                   +--14  +-12  
  --LA--RG------                   !   !     !                 +7unc_a    
                                   !   !     +-----------------4 
  --LC--RT------                   !   !                       +8hr1_E    
                                   !   !  
  ------RG------                +-15   !                       +7ccr_A    
                                !  !   !        +--------------2 
  ------RT------                !  !   +-------10              +8grq_A    
                                !  !            !  
  ------RT------             +-16  !            +--------------7zs9_e    
                             !  !  !  
  IT------------             !  !  +---------------------------3wkj_D    
                          +-17  !  
  ------RG------          !  !  +----------------------------6iy2_A    
                       +-18  !  
  --LT--RC------       !  !  +----------------------------3kwq_E    
                     -19  !  
  --LT--RC------       !  +----------------------------4xzq_E    
                       !  
  ------RG------       +----------------------------7y7i_E

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updated Wed Dec 18 14:21:05 2024