| structure name | CRYSTAL STRUCTURE OF CIC-HMG-ETV5-DNA COMPLEX (Protein capicua homolog) |
| reference | Song et al. 'Febs 286 4951 2019 |
| source | Homo sapiens |
| experiment | X-ray (resolution=3.00, R-factor=0.301) |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| multimeric complexes | 6jrp_AD 6jrp_GJ |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNFMRDNRSN |
Estimated binding specificities ?
| readout + contact |  |
A | 76 83 0 6 89 72 70 C | 8 6 0 0 0 12 6 G | 6 6 0 89 0 6 12 T | 6 1 96 1 7 6 8scan! |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIA--RA--NASG--ST----YAPG L +-----------------------------1j47_A ! RCNTFTMA--RAHTNTAT--SA----YA-- L ! +3u2b_C ! +-1 RTNTFTMA--RA--NGAC--ST----YA-- L ! +------------------5 +4s2q_D ! ! ! RCNTFTMA--RAHGNAAC--ST-------- L ! ! +4euw_A ! ! RTNAFA----RCDTNTRA--ST------NT L ! +-8 +6jrp_D ! ! ! +-2 KCNT--MAMA--EGSAAC--NT-------- L ! ! ! +-----------4 +2lef_A ! ! ! ! ! RCNGFTMA--RTHTNG----ST----YA-- L ! +---9 +------6 +6t90_L ! ! ! ! KASTYGLASGLA--TGTC--IT-------- L +-16 ! ! +------------3tmm_A ! ! +-10 ! RTNTFTMA--RT--NG----SA----YA-- L ! ! ! ! +---------------------4y60_C ! ! +-11 ! RCNTFTMA--RA--NGSC--ST----YA-- ! ! ! ! +-------------------------1gt0_D ! ! +-12 ! --NAFTIA--RC----SGICST----YA-- L ! ! ! ! +--------------------------1hry_A ! ! ! ! --------VT----FG--FCSA-------- ! ! +-13 +--------------------------4qr9_A ! ! ! ! RTSAYCMT------FT-------------- L -17 ! ! ! +1j5n_A ! ! +-14 +---------------------------3 RC--YTMALTRA--VCTG--AAVCEC---- L ! ! ! ! +1qrv_A ! ! ! ! RTNAFTIA--RA--NT----SA-------- L ! +-15 +---------------------------6edb_B ! ! ----FTIA--RT--QTLA--MT-------- L ! ! +-----------------5jh0_D ! +---------7 ------FTCA----IG----AT-------- ! +-----------------6oem_H ! RTNGFTMA--RT--NTAT--SA----YAPT L +-----------------------------6t78_A |
home
updated Tue Dec 19 13:23:21 2023