8jhg_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	NATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	8jhg_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jhg_C interface=110, ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpkkteshH

  
  ----RT--       +-----------------------------7kbd_C    
                 !  
  ------KG       !                           +---7nkx_f    
                 !  +------------------------2 
  LA--RG--       !  !                        +---7unc_a    
               -11  !  
  ----RC--       !  !                             +---7xyf_B    
                 !  !                +------------1 
  IT------       !  !            +---3            +---3wkj_D    
                 !  !            !   ! 
  LT--RC--       !  !         +--4   +----------------3kwq_E    
                 +-10         !  ! 
  ----RG--          !       +-5  +--------------------6iy2_A    
                    !       ! ! 
  --KT----   L      !     +-6 +-----------------------7cvo_A    
                    !     ! ! 
  ----RG--          !   +-7 +------------------------7ccr_A    
                    !   ! ! 
  LT--RC--          ! +-8 +-------------------------4xzq_E    
                    ! ! ! 
  ----RT--          +-9 +--------------------------7zs9_e    
                      ! 
  ----RG--            +--------------------------7y7i_E

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updated Sat Sep 14 11:12:42 2024