Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameNATIVE SUV420H1 BOUND TO 167-BP NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8jhg_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA------                                     +1zla_C    
                                    +--------------3 
  ----RG------                 +----7              +8ox0_C    
                               !    ! 
  ----RA----RA          +-----10    +---------------6a5l_g    
                        !      !  
  ----RG------          !      +--------------------5x0y_G    
                        !  
  ----RT------          !                             +7kbd_C    
                        !     +-----------------------1 
  ----RG------       +-18     !                       +8jla_C    
                     !  !  +-13  
  ----RG------       !  !  !  !                       +7ccr_A    
                     !  !  !  !        +--------------2 
  ----RT------       !  !  !  +--------6              +8grq_A    
                     !  !  !           ! 
  LC--RT------       !  +-15           +--------------8hr1_E    
                     !     !  
  --------KG--       !     !                     +---7nkx_f    
                     !     !        +------------5 
  LA--RG------       !     +--------8            +---7unc_a    
                     !              ! 
  ------RA----       !              +----------------6g0l_D    
                   -19  
  ----RC------       !                                +---7xyf_B    
                     !                   +------------4 
  IT----------       !              +----9            +---3wkj_D    
                     !              !    ! 
  LT--RC------       !           +-11    +----------------3kwq_E    
                     !           !  !  
  ----RG------       !        +-12  +---------------------6iy2_A    
                     !        !  !  
  --KT--------   L   !     +-14  +-----------------------7cvo_A    
                     !     !  !  
  LT--RC------       !  +-16  +------------------------4xzq_E    
                     !  !  !  
  ----RT------       +-17  +-------------------------7zs9_e    
                        !  
  ----RG------          +--------------------------7y7i_E    
                   

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updated Wed Dec 18 18:40:55 2024