Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameH2AK119UB-MODIFIED NUCLEOSOME UBIQUITIN POSITION 1
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6wkr_CEIJKMOQRS 8g6q_ABCDEFGH 8u5h_IJKMOQRS
redundant complexes6wkr 8g6s 8u5h
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RG------          +-----------------------------5x0y_G    
                       +-18  
  ------RG------       !  +-----------------------------8ox0_C    
                       !  
  ------RA------       !                              +1zla_C    
                       !               +--------------2 
  ------RA----RA       !  +------------7              +6a5l_g    
                       !  !            ! 
  ------RG------       !  !            +---------------8jla_C    
                       !  !  
  ------RT------       !  !                    +--------------------7kbd_C    
                     -19  !                  +-9 
  ----KT--------   L   !  !                  ! !               +----7cvo_A    
                       !  !                  ! +---------------5 
  --------RA----       !  !                  !                 +----6g0l_D    
                       !  !                  !  
  ------RC------       !  !                  !                      +7xyf_B    
                       !  !                  !                  +---3 
  ----------KG--       !  !              +--11                  !   +7nkx_f    
                       !  !              !   !             +----4 
  --LA--RG------       !  !              !   !             !    !    +7unc_a    
                       +-17              !   !    +--------6    +----1 
  ------RT------          !              !   !    !        !         +8grq_A    
                          !              !   !  +-8        ! 
  LC----RT------          !           +-12   !  ! !        +---------8hr1_E    
                          !           !  !   +-10 ! 
  ------RG------          !           !  !      ! +------------------7ccr_A    
                          !           !  !      !  
  ------RT------          !        +-13  !      +--------------------7zs9_e    
                          !        !  !  !  
  --IT----------          !        !  !  +--------------------------3wkj_D    
                          !     +-14  !  
  --LT--RC------          !     !  !  +---------------------------3kwq_E    
                          !  +-15  !  
  ------RG------          !  !  !  +---------------------------6iy2_A    
                          +-16  !  
  --LT--RC------             !  +---------------------------4xzq_E    
                             !  
  ------RG------             +---------------------------7y7i_E    
                     

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updated Wed Dec 18 17:13:01 2024