3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameH2AK119UB-MODIFIED NUCLEOSOME UBIQUITIN POSITION 1
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6wkr_CEIJKMOQRS 8g6q_ABCDEFGH 8u5h_IJKMOQRS
redundant complexes6wkr 8g6s 8u5h
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RG------       +-----------------------------8ox0_C    
                       !  
  ------RA------       !                              +1zla_C    
                       !                +-------------4 
  ------RA----RA       !           +----9             +6a5l_g    
                       !           !    ! 
  ------RG------       !  +-------11    +--------------5x0y_G    
                       !  !        !  
  ------RG------       !  !        +-------------------8jla_C    
                       !  !  
  ------RT------     -19  !              +-----------------------7kbd_C    
                       !  !              !  
  ----------KG--       !  !              !                   +---7nkx_f    
                       !  !              !      +------------5 
  --LA--RG------       !  !              !      !            !   +7unc_a    
                       !  !              !      !            +---2 
  ------RT------       !  !           +-13      !                +8grq_A    
                       !  !           !  !  +--10  
  --LT--RC------       !  !           !  !  !   !                +3kwq_E    
                       !  !           !  !  !   ! +--------------3 
  LC----RT------       +-18           !  !  !   +-8              +8hr1_E    
                          !           !  !  !     ! 
  ------RG------          !           !  +-12     +--------------7ccr_A    
                          !           !     !  
  ------RC------          !        +-14     !                +---7xyf_B    
                          !        !  !     !         +------6 
  ----KT--------   L      !        !  !     !         !      +---7cvo_A    
                          !        !  !     +---------7 
  --IT----------          !        !  !               !          +3wkj_D    
                          !     +-15  !               +----------1 
  --------RA----          !     !  !  !                          +6g0l_D    
                          !     !  !  !  
  --LT--RC------          !  +-16  !  +------------------------4xzq_E    
                          !  !  !  !  
  ------RT------          !  !  !  +------------------------7zs9_e    
                          +-17  !  
  ------RG------             !  +---------------------------6iy2_A    
                             !  
  ------RG------             +---------------------------7y7i_E    
                     

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updated Mon Aug 4 00:10:27 2025