Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameH2AK119UB-MODIFIED NUCLEOSOME UBIQUITIN POSITION 1
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6wkr_CEIJKMOQRS 8g6q_ABCDEFGH 8u5h_IJKMOQRS
redundant complexes6wkr 8g6s 8u5h
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RT--       +-----------------------------7kbd_C    
                 !  
  ----RC--       !                                     +7xyf_B    
                 !                                  +--1 
  ------KG       !                 +----------------2  +7nkx_f    
                 !                 !                ! 
  LA--RG--       !              +--3                +---7unc_a    
                 !              !  ! 
  IT------       !            +-4  +--------------------3wkj_D    
                 !            ! ! 
  --KT----   L -11          +-5 +-----------------------7cvo_A    
                 !          ! ! 
  LT--RC--       !        +-6 +------------------------3kwq_E    
                 !        ! ! 
  ----RG--       !      +-7 +-------------------------6iy2_A    
                 !      ! ! 
  ----RG--       !    +-8 +-------------------------7ccr_A    
                 !    ! ! 
  LT--RC--       !  +-9 +--------------------------4xzq_E    
                 !  ! ! 
  ----RT--       +-10 +--------------------------7zs9_e    
                    !  
  ----RG--          +---------------------------7y7i_E

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updated Sat Sep 14 10:06:06 2024