1u0c_A : 3D-footprint complex

structure name	Y33C MUTANT OF HOMING ENDONUCLEASE I-CREI (DNA endonuclease I-CreI)
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.50, R-factor=0.220)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
multimeric complexes	1bp7_AB 1bp7_CD 1g9y_AB 1t9i_AB 1t9j_AB 1u0c_AB 1u0d_AB 2i3p_AB 2vbj_AB 2vbo_AB 3mxb_AB 3mxb_RS 4aad_AB 4aae_AB 4aaf_AB 4aag_AB 4aqu_AB 6fb8_AB
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0c_A interface=21,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiiaQiKpNqSCkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SQKNSCQQTYRRVKT

Estimated binding specificities ?

readout + contact

# IC=9.913 IC/col=0.991 n_of_columns=10

specificity:

A |  96   0  96   0  96  13  20   0  96  13
C |   0   0   0  96   0  13  15   0   0  54
G |   0  96   0   0   0  54  13   0   0  13
T |   0   0   0   0   0  16  48  96   0  16

scan!

home
updated Thu Sep 12 15:36:00 2024