interface graph thumbnail
legend  pdf

structure nameY33C MUTANT OF HOMING ENDONUCLEASE I-CREI
(DNA endonuclease I-CreI)
referenceStoddard et al. J.Mol.Biol. 342 31 2004
sourceChlamydomonas reinhardtii
experimentX-ray (resolution=2.50, R-factor=0.220)
structural superfamilyHoming endonucleases;
sequence familyLAGLIDADG endonuclease;
multimeric complexes1bp7_AB 1bp7_CD 1g9y_AB 1t9i_AB 1t9j_AB 1u0c_AB 1u0d_AB 2i3p_AB 2i3q_AB 4aad_AB 4aae_AB 4aaf_AB 4aag_AB 4aqu_AB 6fb8_AB
reference complex1t9i_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSQKNSCQQTYRRVKT

Estimated binding specificities ?

readout + contactlogo
# IC=9.921 IC/col=0.992 n_of_columns=10 specificity:   
A |  16   0  96  48  13   0   0   0   0   0
C |  13   0   0  22  54   0   0   0  96   0
G |  54   0   0  13  16   0  96   0   0   0
T |  13  96   0  13  13  96   0  96   0  96
scan!

home
updated Thu Jan 8 19:18:33 2026