4aae_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN ALTERED TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY AGCG FROM 5' TO 3') (DNA ENDONUCLEASE I-CREI)
reference	Marenchino et al. 'Nucleic 40 6936 2012
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.60, R-factor=0.182)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
multimeric complexes	1bp7_AB 1bp7_CD 1g9y_AB 1t9i_AB 1t9j_AB 1u0c_AB 1u0d_AB 2i3p_AB 2vbj_AB 2vbo_AB 3mxb_AB 3mxb_RS 4aad_AB 4aae_AB 4aaf_AB 4aag_AB 4aqu_AB 6fb8_AB
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aae_A interface=23,25,27,29,31,32,37,43,67,69,138,139, ntkynkefllylagfvdgdgsiIaQiKpNqSYkfkhQlsltfQvtqktqrrwfldklvdeigvgyvRdRgsvsnyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	IQKNSYQQRRKT

Estimated binding specificities ?

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# IC=11.181 IC/col=1.016 n_of_columns=11

specificity:

A |  11   0   0  96   0   0   5   0   1   0   0
C |  62  11   0   0  96   0  11   6  28   0   0
G |   5  22  96   0   0  96  11   0   0   0  96
T |  18  63   0   0   0   0  69  90  67  96   0

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updated Mon Dec 16 22:45:15 2024