6fq8_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CLASS 3 : TRANSLOCATED NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH
redundant complexes	6fq5 6fq6
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fq8_A interface=3,5, phRyRpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirg

  
  --RA----LT--       +-----------------------------4z5t_A    
                     ! 
  --RT------RA       !                              +7ea8_A    
                     !                      +-------1 
  HTRG------RT       !                      !       +8g57_E    
                     !                 +----6 
  ----------RA     --9                 !    !    +--7xsx_a    
                     !                 !    +----5 
  ----------RC       !               +-7         +--6qld_f    
                     !               ! ! 
  --RG--RC----       !               ! !             +6fq8_A    
                     !               ! !           +-3 
  --RGYA--LC--       +---------------8 +-----------4 +5mlu_A    
                                     !             ! 
  --RG--------                       !             +6y5d_Q    
                                     ! 
  --RT--RG----                       !             +6pww_K    
                                     +-------------2 
  HTRA----LTRC                                     +5xm1_A

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updated Fri Sep 13 21:40:49 2024