interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF C/EBPBETA BZIP DOMAIN BOUND TO A HIGH AFFINITY DNA
(CCAATenhancer-binding protein beta)
referenceChen et al. J.Biol.Chem. 300 105776 2024
sourceHomo sapiens
experimentX-ray (resolution=2.20, R-factor=0.239)
structural superfamilyLeucine zipper domain;
sequence familyBasic region leucine zipper; bZIP transcription factor;
multimeric complexes1gtw_AB 1gu4_AB 1gu5_AB 1h88_ABC 1h89_ABC 1h8a_ABC 1hjb_ABC 1hjb_DEF 1io4_ABC 2e42_AB 2e43_AB 6mg1_AB 6mg2_AB 6mg3_AB 7l4v_AB 7upz_AB 8k8d_AB
reference complex6mg1_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNNAVSR

Estimated binding specificities ?

readout + contactlogo
# IC=4.894 IC/col=0.979 n_of_columns=5 specificity:   
A |   0   0  76   0  19
C |   0   0   0  96  19
G |   0   0  20   0  39
T |  96  96   0   0  19
scan!

home
updated Sun Aug 3 01:45:18 2025