Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE HUMAN NUCLEOSOME CORE PARTICLE UBIQUITYLATED AT HISTONE H2A LYSINE 15 IN COMPLEX WITH RNF168-UBCH5C (CLASS 1)
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes8u13_ABCDEFGH 8u14_ABCDEFGH 8upf_ABCDEFGH
redundant complexes8upf_C 8u14
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA------                                       +1zla_C    
                                        +--------------2 
  ------RG------                   +----7              +8ox0_C    
                                   !    ! 
  ------RA----RA                +-10    +--------------6a5l_g    
                                !  !  
  ------RG------          +----13  +-------------------5x0y_G    
                          !     !  
  ------RG------          !     +----------------------8jla_C    
                          !  
  KG----RT------          !            +--------------------7kbd_C    
                          !            !  
  ------RC------          !         +-11          +---------7on1_c    
                          !         !  !  +-------6 
  --LC--RT------          !         !  !  !       +---------8hr1_E    
                          !         !  +--9 
  ------RG------          !      +-14     !                 +7ccr_A    
                       +-20      !  !     +-----------------1 
  ------RT------       !  !      !  !                       +8grq_A    
                       !  !      !  !  
  ----------KG--       !  !  +--15  !                  +---7nkx_f    
                       !  !  !   !  +------------------4 
  --LA--RG------       !  !  !   !                     +---7unc_a    
                       !  !  !   !  
  ----KT--------   L   !  !  !   !                  +----7cvo_A    
                       !  !  !   +------------------5 
  --------RA----       !  !  !                      +----6g0l_D    
                       !  !  !  
  ------RC------       !  !  !                            +---7xyf_B    
                     -21  +-19               +------------3 
  --IT----------       !     !           +---8            +---3wkj_D    
                       !     !           !   ! 
  --LT--RC------       !     !        +-12   +----------------3kwq_E    
                       !     !        !  !  
  ------RG------       !     !     +-16  +--------------------6iy2_A    
                       !     !     !  !  
  --LT--RC------       !     !  +-17  +-----------------------4xzq_E    
                       !     !  !  !  
  ------RT------       !     +-18  +------------------------7zs9_e    
                       !        !  
  ------RG------       !        +-------------------------7y7i_E    
                       !  
  ------RT------       +-----------------------------5z23_C    
                     

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updated Wed Dec 18 19:39:49 2024