interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMOLECULAR RECOGNITION OF THE NUCLEOSOMAL 'SUPERGROOVE'
(HISTONE H2B)
referenceEdayathumangalam et al. Proc.Natl.Acad.Sci.USA 101 6864 2004
sourceXENOPUS LAEVIS
experimentX-ray (resolution=2.05, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kxb_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5hq2_ABGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5xf6_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6iro_ABCDEFGHL 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6nzo_ABCDEFGHS 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6tem_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wkr_CEIJKMOQRS 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6zhx_ABCDEFGH 7at8_ADEFGHIJK 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7e8i_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7m1x_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7unc_ABabcdefgh 7und_ABEZabdefgh 7vdt_ABCDEFGHK 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8euj_HMOabfhk 8g86_ABCDEFGH 8siy_CDEFGHIJ 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH
redundant complexes5o9g 6kw4 6ltj 6kw3 6kw5 6ftx 6r25 6g0l 3c1c 1zla 3c1b 2f8n 6px1 6pww 5e5a 6ryr 4zux 6nzo 6ryu 6i84 6px3 6pwx 6pa7 6pwv 6uh5 6nn6 6o96 6j99 4r8p 6esf 7cro 6uxw 3tu4 6iro 3rek 3o62 5hq2 5omx 6vyp 6tda 6wz9 5z3u 6kiz 5x0y 6s01 6esh 6ven 6kiu 6wz5 6esg 6esi 3reh 5z3o 3rel 5z3l 7crq 6k1p 7crp 3kxb 5onw 3mvd 5f99 5z3v 5nl0 6kiw 6nog 7crr 6nj9 6kiv 6r1u 3lja 3rei 6x0n 6t9l 5ong 6kix 3rej 6jyl 6nqa
reference complex5x0y_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RGRGRG----------   L                     +-----1kx5_D    
                                        +-19  
  ----RC----------                      !  !    +6uph_D    
                                        !  +---13  
  ----RG----IT----                 +---22       +6ipu_H    
                                   !    !  
  ----------AT----                 !    !  +-----6r2v_C    
                                   !    +-20  
  --------------RT                 !       +-----6jou_C    
                                   !  
  --------------RT              +-24             +2f8n_K    
                                !  !           +-2 
  --------------RG              !  !           ! +6k1k_C    
                                !  !      +---12  
  ------------RART              !  !      !    !   +4x23_Q    
                                !  !      !    ! +-3 
  --------------RT              !  !      !    +-5 +6px1_C    
                                !  +-----18      ! 
  --------------RA              !         !      +6t79_C    
                            +--25         !  
  --------------RT          !   !         !    +6m4d_C    
                            !   !         +---16  
  --------------RT          !   !              ! +6m4g_G    
                            !   !              +-8 
  --------------RC          !   !                +6qld_g    
                            !   !  
  ----------IT----          !   !             +3wkj_D    
                            !   !          +-10  
  ----RG----------          !   !          !  +6qld_d    
                            !   +---------17  
  --------AT------          !              !  +4awl_B    
                         +-26              +--1 
  --------AT------       !  !                 +6r2v_B    
                         !  !  
  --------------RC       !  !                       +6qld_f    
                         !  !                     +-4 
  --------------RC       !  !                   +-6 +6uph_B    
                         !  !                   ! ! 
  --------------RC       !  !                +-11 +4jjn_B    
                         !  !                !  !  
  --------------RG       !  !          +----15  +3w99_F    
                       -27  !          !     !  
  --------------RT       !  +---------21     +6ipu_B    
                         !             !  
  ------LC------RG       !             !      +4jjn_A    
                         !             +------9 
  ------LT------RC       !                    +6ipu_E    
                         !  
  ------LT--------       !                  +6e0p_A    
                         !        +--------14  
  --------------RT       !        !         +6uph_E    
                         +-------23  
  --------------RG                !          +5t5k_E    
                                  +----------7 
  ------LT--------                           +6mup_E    
                       

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updated Thu Sep 12 15:28:28 2024