interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF FIS BOUND TO 27 BP OPTIMAL BINDING SEQUENCE F2
(DNA-binding protein fis)
referenceJohnson et al. 'Genes 24 814 2010
sourceEscherichia coli
experimentX-ray (resolution=2.90, R-factor=0.224)
structural superfamilyHomeodomain-like;
sequence familyBacterial regulatory protein, Fis family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTNRTR

Estimated binding specificities ?

contactlogo
# IC=4.475 IC/col=0.746 n_of_columns=6 specificity:   
A |   0   0  13  24  16  96
C |   0   0  13  24  13   0
G |   0  96  13  24  13   0
T |  96   0  57  24  54   0
scan!

home
updated Mon Dec 16 21:05:28 2024