interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO THE HUMAN NR1D1 RESPONSE ELEMENT
(RETINOIC ACID RECEPTOR RXR-ALPHA)
referencePoussin-Courmontagne et al. Sci.Rep. 5 8216 2015
sourceHOMO SAPIENS
experimentX-ray (resolution=2.00, R-factor=0.171)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSEKKRR

Estimated binding specificities ?

readout + contactlogo
# IC=4.853 IC/col=0.971 n_of_columns=5 specificity:   
A |   0   0   1   0  38
C |   0   0  19  96  20
G |  96   0   0   0  19
T |   0  96  76   0  19
scan!

home
updated Mon Dec 16 22:57:19 2024