interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF FIS BOUND TO 27BP INOSINE SUBSTITUTED DNA F29-DI (AAATTTGTTTGIICICTGAGCAAATTT)
(DNA-binding protein fis)
referenceHancock et al. 'Nucleic 41 6750 2013
sourceEscherichia coli
experimentX-ray (resolution=2.90, R-factor=0.232)
structural superfamilyHomeodomain-like;
sequence familyBacterial regulatory protein, Fis family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTNRR

Estimated binding specificities ?

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# IC=4.046 IC/col=0.674 n_of_columns=6 specificity:   
A |   9  69  24  69   0  96
C |  67   9  24   9  96   0
G |   9   9  24   9   0   0
T |  11   9  24   9   0   0
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updated Mon Dec 16 23:34:30 2024