7v9c_H : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	TELOMERIC DINUCLEOSOME IN OPEN STATE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	3w97_ABCDEFGH 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6jxd_ABCDEFGH 6ke9_ABCDEFGH 6l9h_ABCDEFGH 6le9_ABCDEFGH 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7yqk_ABCDEFGH
redundant complexes	6le9_D 7v90_D 7v9s_Z 6ipu 6iq4 6ke9 6l9h 7va4 3w97 6jxd 7v96 7v9j 7v9k 7yqk
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7v9c_H interface=3, rsRkesysvyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa

  
  RG--------------                        +7k5x_H    
                                        +-2 
  RG--------------                      ! +7k60_H    
                                +-------4 
  RT--------------              !       ! +7v9c_H    
                                !       +-1 
  RG--------------           +-11         +6y5d_H    
                             !  !  
  ------------RT--           !  !      +6m4d_C    
                         +--12  +------5 
  ------------RT--       !   !         +7lyb_G    
                         !   !  
  --RA--ET--RT----       !   +--------4ne1_p    
                         !  
  ------------RA--       !              +7xsx_a    
                       -14            +-3 
  ----LT----------       !          +-7 +7ywx_E    
                         !          ! ! 
  ----LA------RG--       !  +-------9 +7unc_a    
                         !  !       ! 
  --------------RA       !  !       +-7n8n_A    
                         +-13  
  ------------RC--          !        +6qld_f    
                            !  +-----8 
  ----RAAANA------          !  !     +1jfi_B    
                            +-10  
  ------------RT--             !     +7m1x_C    
                               +-----6 
  ------------RA--                   +6t7a_C

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updated Fri Dec 23 06:40:22 2022