| structure name | CRYSTAL STRUCTURE OF VITAMIN D RECEPTOR AND 9-CIS RETINOIC ACID RECEPTOR DNA-BINDING DOMAINS BOUND TO A DR3 RESPONSE ELEMENT (RETINOIC ACID RECEPTOR RXR-ALPHA) |
| reference | Shaffer et al. 'J.Steroid 89-90 215 2004 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=3.00, R-factor=?) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Zinc finger, C4 type two domains; |
| multimeric complexes | 1ynw_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EKKR |
Estimated binding specificities ?
| contact |  |
A | 13 0 13 0 96 C | 13 0 13 96 0 G | 57 96 13 0 0 T | 13 0 57 0 0scan! |
Dendrogram of similar interfaces ?
matrix format----EC--KA--RGRG---- L +-----------------------------4nqa_I ! ----EC--KG--KGRG---- L ! +---------------------------2ff0_A ! ! ----EC--KG--RGRG---- L ! ! +2nll_B ! ! +-------------3 ----EA--KG--RTRG---- L ! ! ! +1kb2_B ! ! ! --HGECAGKGAAKGRT---- L ! ! ! +----1lo1_A ! ! +-15 ! --------KGVT--RG---- ! ! ! ! +--13 +1r4i_A ! ! ! ! ! ! +-7 ----ET--KGAT--RG---- L ! ! ! ! ! +-10 +1lat_A ! ! ! ! ! ! ----EC--KG--KTRG---- L -21 +-19 ! +---14 +-2nll_A ! ! ! ! ! ----EC--KG--RGRG---- L ! ! ! ! ! +1dsz_A ! ! ! +---16 ! +-4 ----EA--KG--KTRG---- L ! ! ! ! ! +-------8 +2han_A ! ! ! ! ! ! --------KGVT--RG---- L ! ! ! ! ! +5cbz_E ! ! ! ! ! ----EC--KG--KGRG---- L ! ! ! ! ! +1ynw_B ! ! ! ! ! +-5 ----EC--KG----RA---- L ! ! ! ! ! ! +5krb_G ! ! ! ! +--------------9 --------KGVT--RG---- L ! ! +----18 ! +6x6e_A ! ! ! +-6 ----EC--KG--RGRG---- L +-20 ! +3dzy_D ! ! CA--EC--KG--KGRG---- L ! ! +---6l6q_B ! ! +--------------12 ----DG--KG--RTRG---- L ! ! ! ! +3cbb_A ! ! ! +---1 ----EC--KG--KGRG---- ! ! ! +3dzy_A ! +-17 --HC----KGVT--RG--RT ! ! +3g9m_B ! ! +---2 ----EA--KG--RTRTRT-- ! +--------------11 +4umm_E ! ! ----EC--KGAG--RG---- L ! +---4ond_A ! ----EC--KG--RGRG---- L +----------------------------5uan_B |
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updated Thu Dec 22 18:02:28 2022