| structure name | AART, A SIX FINGER ZINC FINGER DESIGNED TO RECOGNIZE ANN TRIPLETS (AART) |
| reference | Barbas III et al. J.Mol.Biol. 363 405 2006 |
| source | MUS MUSCULUS |
| experiment | X-ray (resolution=1.96, R-factor=0.203) |
| structural superfamily | C2H2 and C2HC zinc fingers; |
| sequence family | Zinc finger, C2H2 type; Domain of unknown function DUF1610; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RDHKDRQRANQAHRDNTRRDA |
Estimated binding specificities ?
| readout + contact |  |
A | 10 0 0 96 0 0 0 96 96 96 96 0 10 0 0 0 0 0 C | 12 0 0 0 0 0 0 0 0 0 0 0 66 85 96 0 0 0 G | 10 96 11 0 96 96 96 0 0 0 0 96 10 0 0 96 96 96 T | 64 0 85 0 0 0 0 0 0 0 0 0 10 11 0 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix formatCTSTQT--LTITST--STHTRG----RG----EA--RA----TTTGEC--RG----RG----ET--------RG--SCEC--RG L +-----------------------------5v3j_F +-25 --SGHG--RGRGDC--SCHG------DC--SANA------WC--SCVG--RG----DC--SGNA------------STHG--RG L ! +-----------------------------5v3g_A ! RGDCHG----------KGDCRG----QARGATNA------QA--ATHG--------RG--DCNA----TT--RGRTDAAT---- L ! +--2i13_A ! +--------------4 TTTCLA------TTSC--ECRGYG--EC--SCKG--RG--DG--YCKG--RG--TCQA----TC--------RA--SCDC---- L ! +--10 +--5t0u_A ! ! ! ------RGYG--EC--SCKGRG------TCYCKA--RGTCQAST--TC--------RC--SCDC----VT-------------- L ! ! +-----------------5yef_B ! +-12 ----------------SA--MT----VT----NA--RG------ETTG--------YG--ST---------------------- ! ! ! +----------------6e94_A ! ! +----9 ------------NG--SGHGRG----DA--SCHG--RGRGDC--SCNA--------NCKTSAHG----RG-------------- L ! +-13 ! +5ei9_F ! ! ! +----------------1 ------------EC--SGKGRG----DG--YCKG--RG--QA----TC--------RA--SCDC----VT-------------- L ! ! ! +5k5h_A ! +-15 ! ----------------TCSGRG----LT--ETYC------NTYGQG-------------------------------------- L ! ! ! +-----------------------6dfb_A ! ! ! ----------FT----KAYT------WT--WTST--ET--FTVASGDC--SA-------------------------------- L ! ! +------------------------6jnm_A ! ! --------------------KT----EC--SCKG--RG--LT--FCNA--------QA--TTNA-------------------- L ! +-16 +----1ubd_C ! ! ! +------------------5 ------------EC--SCKGRG------TCYCKA--RG--QA----TC--------RA--SCDC----VT-------------- ! ! ! ! +----5yeg_A ! ! ! ! --------------------------QA--TCNA------QAHTTT----QA----TTLAHGTC--DTRG-------------- L ! ! ! ! +1g2d_F -26 ! +-14 +----2 --------------------------AT--YC--------RA----NC----------ATSGDC----KG--DCPTSGSARTKG L ! ! ! +-------6 +2gli_A ! ! ! ! ! ----------NGKT--WTKG----------HTHG--RGTGTT--ACNA--KGRG------------------------------ L ! +-17 ! +----8 +-----1tf3_A ! ! ! ! ! ! ------------RGSTDAHARG----RGSTDCHG--TT--RG--DAEG--RG-------------------------------- L ! ! ! +---11 +-------------5kl3_A ! ! ! ! ------------------------FARGSGSCTC--TAHCQA--STDC--KT----QASGSANA--IGTT-------------- L ! ! ! ! +-2kmk_A ! +-18 ! +----------------3 KGWTKA----------HCHGRG----TA--ACNA--KG---------------------------------------------- L ! ! ! ! +-1tf6_A ! ! ! ! ----------------------------------------------YG--------WT--WTST----ET--FTVASGDCSART L ! ! ! +--------------------------6a57_A ! +-19 ! --------------------------DC--SCQG--KTTTAT--SCSC--------DC--SGAT--RARG--RG--DCNA---- L ! ! ! ! +-----------6ml4_A ! ! ! +----------------7 ------------DC--YCKGRG----QA----TC------RC--SCDC--VT-------------------------------- L ! +-20 ! +-----------5k5i_A ! ! ! ! --------------------------QA--TTNA----STQAQTATSTNTAT----TTLAHGTC----RG-------------- L ! ! ! +----------------------------1g2f_F ! +-21 ! --------------------------RGSTDTEG--RG--RGSGDCHG--TT----RG--DAEG----RG-------------- L ! ! ! +----------------------------4x9j_A ! +-22 ! ECSCKG--RG--DCTCYCKGRG----QA----TC------RC--SCDC--VT-------------------------------- L ! ! ! +----------------------------5und_A ! +-23 ! --------------------------QA--SGNA--KG--QASTSCDC--KG----RG--DCHA----RG-------------- L ! ! ! +----------------------------1mey_C +-24 ! ----------------------------------------QG--RGHT--MG----QG----LGLC----TTRG---------- L ! +----------------------------5yel_A ! ----------RGST--YGYC------QC--TGSTRAYT---------------------------------------------- L +-----------------------------3uk3_C |
home
updated Tue Dec 19 06:35:22 2023