interface graph thumbnail
legend  pdf

structure nameI-PPOL HOMING ENDONUCLEASE/DNA COMPLEX
(INTRON-ENCODED ENDONUCLEASE I-PPOI)
referenceMonnat Junior et al.
sourcePhysarum polycephalum
experimentX-ray (resolution=2.20, R-factor=0.216)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTRLK

Estimated binding specificities ?

readout + contactlogo
# IC=8.517 IC/col=0.852 n_of_columns=10 specificity:   
A |  93  59   0  49  23  96   0   2   0  78
C |   0   7   4   2  12   0   0  43  96   4
G |   2  17  88  41  61   0  96   7   0   7
T |   1  13   4   4   0   0   0  44   0   7
scan!

home
updated Thu Sep 12 14:31:52 2024