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legend  pdf

structure nameINTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX
(INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI)
referenceStoddard et al. Nat.Struct.Biol. 6 1096 1999
sourcePhysarum polycephalum
experimentX-ray (resolution=1.93, R-factor=0.204)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
redundant complexes2o6m 1ipp 1a74 1cz0
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTVRLK

Estimated binding specificities ?

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# IC=8.982 IC/col=0.898 n_of_columns=10 specificity:   
A |  82  71   6  23   0  96   0  24   0  96
C |   1   6   9   6   0   0   0  24  96   0
G |  13  13  75  54  96   0  96  24   0   0
T |   0   6   6  13   0   0   0  24   0   0
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updated Thu Sep 12 14:35:36 2024