interface graph thumbnail
legend  pdf

structure nameH98Q MUTANT OF THE HOMING ENDONUCLEASE I-PPOI COMPLEXED WITH DNA
(Intron-encoded endonuclease I-PpoI)
referenceEastberg et al. Biochemistry 46 7215 2007
sourcePhysarum polycephalum
experimentX-ray (resolution=2.30, R-factor=0.211)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTVRLK

Estimated binding specificities ?

readout + contactlogo
# IC=8.631 IC/col=0.959 n_of_columns=9 specificity:   
A |   0  33   0   0  13  14   6   6   0
C |   0   6  96   0  83   0  84  12   6
G |  96  51   0   0   0   6   6   2   1
T |   0   6   0  96   0  76   0  76  89
scan!

home
updated Thu Sep 12 16:23:06 2024