interface graph thumbnail
legend  pdf

structure nameHOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH7.0 (K+ MES) WITH NA+
(Intron-encoded endonuclease I-PpoI)
referenceChang et al. 'To ? ? ?
sourcePhysarum polycephalum
experimentX-ray (resolution=1.68, R-factor=0.170)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB 8vmo_AB 8vmp_AB 8vmq_AB 8vmr_AB 8vms_AB 8vmt_AB 8vmu_AB 8vmv_AB 8vmw_AB 8vmx_AB 8vmy_AB 8vmz_AB 8vn0_AB 8vn1_AB 8vn2_AB 8vn3_AB 8vn4_AB 8vn5_AB 8vn6_AB 8vn7_AB 8vn8_AB 8vn9_AB 8vna_AB 8vnb_AB 8vne_AB 8vnf_AB 8vng_AB 8vnh_AB 8vnj_AB 8vnk_AB 8vnl_AB 8vnm_AB 8vnn_AB 8vno_AB 8vnp_AB 8vnq_AB 8vnr_AB 8vns_AB 8vnt_AB 8vnu_AB
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTVRLK

Estimated binding specificities ?

readout + contactlogo
# IC=9.250 IC/col=0.925 n_of_columns=10 specificity:   
A |  96  58   0  66   0  96   0  14   0  75
C |   0  14   4   1   0   0   0  25  96   8
G |   0   8  84  29  96   0  96  16   0   8
T |   0  16   8   0   0   0   0  41   0   5
scan!

home
updated Tue Dec 17 20:47:51 2024