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legend  pdf

structure nameHOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 20S
(Intron-encoded endonuclease I-PpoI)
referenceChang et al. 'To ? ? ?
sourcePhysarum polycephalum
experimentX-ray (resolution=1.48, R-factor=0.174)
structural superfamilyHis-Me finger endonucleases;
multimeric complexes1a74_AB 1cyq_AB 1cz0_AB 1ipp_AB 2o6m_AB
reference complex8vms_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureANRQKTVRLK

Estimated binding specificities ?

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# IC=9.540 IC/col=0.954 n_of_columns=10 specificity:   
A |  96  64   2  49   0  96   0  11   0  96
C |   0   9   4  14   0   0   0  24  96   0
G |   0   4  76  24  96   0  96   9   0   0
T |   0  19  14   9   0   0   0  52   0   0
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updated Fri Sep 13 14:25:44 2024